Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06778 147 / 2e-43 Chaperone DnaJ-domain superfamily protein (.1) AT4G19590 67 / 1e-12 Chaperone DnaJ-domain superfamily protein (.1) AT2G01710 62 / 6e-11 Chaperone DnaJ-domain superfamily protein (.1) AT4G19570 61 / 1e-10 Chaperone DnaJ-domain superfamily protein (.1) AT2G25560 61 / 2e-10 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G18750 60 / 4e-10 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G04980 60 / 5e-10 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G37750 56 / 2e-09 Chaperone DnaJ-domain superfamily protein (.1) AT5G49060 56 / 6e-09 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) AT3G06340 56 / 7e-09 DNAJ heat shock N-terminal domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016835 [exp] 394 / 1e-140 AT3G06778 140 / 3e-41 Chaperone DnaJ-domain superfamily protein (.1) Lus10015891 [exp] 69 / 2e-13 AT2G01710 310 / 2e-104 Chaperone DnaJ-domain superfamily protein (.1) Lus10028842 [exp] 69 / 4e-13 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10009275 [exp] 66 / 3e-12 AT2G01710 300 / 2e-100 Chaperone DnaJ-domain superfamily protein (.1) Lus10008983 [exp] 65 / 7e-12 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001171 [exp] 64 / 1e-11 AT2G05250 308 / 2e-98 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001744 [exp] 62 / 6e-11 AT2G05250 322 / 5e-103 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10006380 [exp] 59 / 7e-10 AT5G35753 420 / 2e-136 Domain of unknown function (DUF3444) (.1) Lus10012334 [exp] 59 / 1e-09 AT5G35753 414 / 3e-134 Domain of unknown function (DUF3444) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G211300 [exp] 194 / 4e-61 AT3G06778 170 / 3e-52 Chaperone DnaJ-domain superfamily protein (.1) Potri.010G005700 [exp] 182 / 1e-56 AT3G06778 153 / 1e-45 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G165600 [exp] 69 / 4e-13 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G098800 [exp] 69 / 5e-13 AT5G53150 282 / 5e-84 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.008G196201 [exp] 65 / 6e-12 AT3G06340 249 / 6e-77 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.002G221000 [exp] 65 / 6e-12 AT2G05230 696 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 64 / 1e-11 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G156100 [exp] 63 / 2e-11 AT2G01710 313 / 9e-106 Chaperone DnaJ-domain superfamily protein (.1) Potri.010G018800 [exp] 64 / 3e-11 AT5G18750 446 / 3e-142 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 63 / 3e-11 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10037711 pacid=23167075 polypeptide=Lus10037711 locus=Lus10037711.g ID=Lus10037711.BGIv1.0 annot-version=v1.0 ATGGCTCCTGCCCTCACACTCACCACCTCTCCCTGCATTCCCCCCATTTCGTCGACTGGTATCGCCTTCTTGCCGTACGTGGAGGAAGATGCAGATATAG ACGTTGTTCGAAGGCGGTACCATAGGCTCGCTTTACAGCTTCATCCTGACAAGAACAGCCATCCTAGAGCTGATACAGCATTCAAGCTTGTCCTTCAGGC TTACTCGGTTCTCTCGGACAATGTCAAGAGAAGAGCCTTTGATGTGGAGAGATGGAAACGCCTCTGCACTGATTGCAACAGAATGCCATACACCACCACC TTGTCGAATTCTAGCCCATCCGAGAACTGCCAGCACGATTCGAGATCCTTGAGGATTCGCCAGGCTCTGAACGATATAAGAGAAAGGTTCAAGGAGGAAG CCAGAGTTATGGAGCATTGTCTCAAGCTTAATACCAATGGTAATGCTGCTGCTGCAAGGGAACTGCCAGTTTACAGTCCATCTTCCTCGTCCCAGTCAAA CCGGTTTTTCCAACGGGACAGCTGCAGATCGAGACGAGAATCGCCCGTCTTCAACCCGTCTGACTACGGTGTTGAGGGGTATCCTCACCTCAGGAACCGG AGGGGCTTGAATAAGCCTGAGAATCTTTGGAACCTGCAGAGGAAACAGACGTTTATTAGTCGTCGACATGGTCAGGGGTCAACAAGAACTTTCGAGTGCC CCATCTTTGAAAACAGGATAGGCAGAGGGATGTTGAATAGCGTCCATTCTTAG
AA sequence Show only first row Show all	>Lus10037711 pacid=23167075 polypeptide=Lus10037711 locus=Lus10037711.g ID=Lus10037711.BGIv1.0 annot-version=v1.0 MAPALTLTTSPCIPPISSTGIAFLPYVEEDADIDVVRRRYHRLALQLHPDKNSHPRADTAFKLVLQAYSVLSDNVKRRAFDVERWKRLCTDCNRMPYTTT LSNSSPSENCQHDSRSLRIRQALNDIRERFKEEARVMEHCLKLNTNGNAAAARELPVYSPSSSSQSNRFFQRDSCRSRRESPVFNPSDYGVEGYPHLRNR RGLNKPENLWNLQRKQTFISRRHGQGSTRTFECPIFENRIGRGMLNSVHS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06778			Chaperone DnaJ-domain superfam...		Lus10037711 [exp]	0	1
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10036336 [exp]	6.2	0.6874
					Lus10010342 [exp]	17.8	0.7460
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10029814 [exp]	25.5	0.7155
AT1G71750		HGPT	Hypoxanthine-guanine phosphori...		Lus10024262 [exp]	25.7	0.7078
AT1G69400			Transducin/WD40 repeat-like su...		Lus10026051 [exp]	31.9	0.7261
AT5G50340			ATP-dependent peptidases;nucle...		Lus10038258 [exp]	168.1	0.6591
AT2G41945			unknown protein		Lus10029305 [exp]	187.1	0.6378
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10017610 [exp]	252.6	0.6291

Compare expression of checked genes

Lus10037711 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.