Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16810 736 / 0 APUM24 pumilio 24 (.1) AT3G20250 62 / 1e-09 APUM5 pumilio 5 (.1) AT3G10360 52 / 2e-06 APUM4 pumilio 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016836 [exp] 1258 / 0 AT3G16810 761 / 0.0 pumilio 24 (.1) Lus10033353 [exp] 54 / 4e-07 AT3G20250 732 / 0.0 pumilio 5 (.1) Lus10034808 [exp] 53 / 9e-07 AT3G20250 880 / 0.0 pumilio 5 (.1) Lus10037976 [exp] 53 / 1e-06 AT3G10360 941 / 0.0 pumilio 4 (.1) Lus10038706 [exp] 47 / 8e-05 AT3G10360 928 / 0.0 pumilio 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G211400 [exp] 836 / 0 AT3G16810 722 / 0.0 pumilio 24 (.1) Potri.010G005600 [exp] 816 / 0 AT3G16810 728 / 0.0 pumilio 24 (.1) Potri.010G225600 [exp] 61 / 3e-09 AT3G10360 868 / 0.0 pumilio 4 (.1) Potri.008G036500 [exp] 54 / 5e-07 AT3G10360 907 / 0.0 pumilio 4 (.1) Potri.008G004300 [exp] 44 / 0.0003 AT3G20250 783 / 0.0 pumilio 5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037712 pacid=23167365 polypeptide=Lus10037712 locus=Lus10037712.g ID=Lus10037712.BGIv1.0 annot-version=v1.0 ATGGCGGAGAACAAGGTAGACAGCACAAGTTCGACGAAGAGGAAGCAATCTCCGGGGCACAAGGCTGGCAAAGATGGCACTGCAACCAAAAAGCCGAAGT TCGGTAGCTCAAATGCCGACGACAAGAAGACGAAACAGCCTTTTAATCCGAAACAGGGGAAATCGAATCATCCGGGAGCTGGTCAACAAACAACCCAGCC TCTATCCAAGCGAGACCTTCGAATCCAAGCTAAGGAGTTGGCTGATGCTAGGAAGATGAAGAGGAAGCGACACTACAGCTTGGAGCAAGAGCTTGCTCGG CTATGGGAGAAGATGAGGAAACGTAACATTGGCAAAGAAGAAAGATCCAAGTTAATCAGTGAAGCCATACAGAAGATGAAAGGGAAGATTCCCGAAATTG CTACTTCTCATGTTTCTTCCCGTGTTCTGCAGACGTGCGTAAAGTATTGCTCACAGACGGAGAGGGACGTTGTGTTTAGTGAGCTGCGACCTCATTTCTT GAACTTCACTTGCAACCCATATGCGGTTCATCTCGTGAAGAAAATGTTAGATAGTGCTTCTAAGAAGCAGGTTGCAGATTTCATAGCCTCTCTTCGTGGC CATGTTGCTTCTCTTCTTCGCCACATGGTTGGATCAGTTGTTGTTGAGCATGTATACCAAGCAGGTAATGCAACTCAAAAACAAGATCTTTTGCTTGAGT TGTATTCCACCGAGCTTCAGCTGTTCAAGGATCTTTCTTCAATCAAAGAGACCAGGTTGCTTGATGTGATCTCAAAGTTGAAGCTTCAAAAACCCGCTGT TTCGAGACATATGATTTCTGTGATTCAGCCAATACTGGAGAAAGGAATTGTTGACCACTCTATCATACATAGAGTGATTATGGAGTACTTCTCCATAGCT GATAAGTCCTCTGCAGCTGATATACTTCAGCAATTGTCTGGTGCACTTCTTGTTCGAATGATCCATACAAAGGATGGGTCTCGGATTGGTGTACTTTGTG TGAAGCATGGGAGTGCAAAGGAAAGAAAGAAAATTGTCAAAGGAATGAAGAGCCACATAGTGAAGATTGCGTTAGATCAATGTGGTAGCGTGGTTCTCGC TTGCATTTTATCCACTGTGGATGACACAAAAATAATGACAAAGATTGTGGTTCGAGAGCTTCAATCTTGTTTGAAGGATCTCATTGTTGATAAGAATGGA AGGCGTCCGATATTGCAGCTTCTTCATCCAAACTGTTCTCGCTATTTCAGCCCTGATGAACTTGCTTCTCTGAATTCATCTATTCCCTCTCTCAGTGCAA AGGCTGGGACGGAATCCAATACCAAAGTAAATGTGAATGATGAAACAAAGACGGTAACAAATGAAGGATCTGCTGATGGGGAAAATGACGTGGAAGATGA TACCATGGCTGAGGGAGATGAAACTGAAAATCTGGTTGAAGGTGGAAAGAAAGATGCGTTAACAAGAAGACGGGAATTATTGGTTGAAAGTGGACTTGCT GAGAACGTCATTGATGTATGCACTGAAAACGTGGAAGAGCTACTCAGGTCTAACTTTGGAAAGGAAGTCTTGTATGAGGTTGCAACTGGCGGTAACAAGG GCGTTCTTCTCCCTTCACTTGGTAAGAAACTGACCACCTTGCATGAGGCAATAGCAACCGTTGCGGCAGAGTCTAAATATGAAGATGAAGAGAAAGAACA TGTGTTCGAAAACTTCCACGCAAGCCGAACCATCAGAAAGCTAGTCTTGGATGCCCCTGGTTTTGCAGCTATTCTGTGGAAGAAGGCTTTGAAAGGGAAG TGTAGCGTTTGGGCCAAAGGCCACAGTTCCAAGGTAATACACGCATTCTTGGACTCCACTGATGAGAAAGTCCGCAAACTCGCCGATTCAGAGCTGCAGC TACTAATCAAGGATGGCACCCTTAAAAGATCGGAAGATAAGGAGTCGGGTAAAGAAGTTTGA
AA sequence Show only first row Show all	>Lus10037712 pacid=23167365 polypeptide=Lus10037712 locus=Lus10037712.g ID=Lus10037712.BGIv1.0 annot-version=v1.0 MAENKVDSTSSTKRKQSPGHKAGKDGTATKKPKFGSSNADDKKTKQPFNPKQGKSNHPGAGQQTTQPLSKRDLRIQAKELADARKMKRKRHYSLEQELAR LWEKMRKRNIGKEERSKLISEAIQKMKGKIPEIATSHVSSRVLQTCVKYCSQTERDVVFSELRPHFLNFTCNPYAVHLVKKMLDSASKKQVADFIASLRG HVASLLRHMVGSVVVEHVYQAGNATQKQDLLLELYSTELQLFKDLSSIKETRLLDVISKLKLQKPAVSRHMISVIQPILEKGIVDHSIIHRVIMEYFSIA DKSSAADILQQLSGALLVRMIHTKDGSRIGVLCVKHGSAKERKKIVKGMKSHIVKIALDQCGSVVLACILSTVDDTKIMTKIVVRELQSCLKDLIVDKNG RRPILQLLHPNCSRYFSPDELASLNSSIPSLSAKAGTESNTKVNVNDETKTVTNEGSADGENDVEDDTMAEGDETENLVEGGKKDALTRRRELLVESGLA ENVIDVCTENVEELLRSNFGKEVLYEVATGGNKGVLLPSLGKKLTTLHEAIATVAAESKYEDEEKEHVFENFHASRTIRKLVLDAPGFAAILWKKALKGK CSVWAKGHSSKVIHAFLDSTDEKVRKLADSELQLLIKDGTLKRSEDKESGKEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16810		APUM24	pumilio 24 (.1)		Lus10037712 [exp]	0	1
AT3G16810		APUM24	pumilio 24 (.1)		Lus10016836 [exp]	1.0	0.9490
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Lus10014680 [exp]	2.0	0.9007
AT2G44040			Dihydrodipicolinate reductase,...		Lus10041701 [exp]	3.9	0.8886
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10011504 [exp]	5.3	0.8775
AT3G58590			Pentatricopeptide repeat (PPR)...		Lus10026937 [exp]	6.1	0.8233
AT3G56990		EDA7	embryo sac development arrest ...		Lus10019107 [exp]	6.9	0.8803
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10037214 [exp]	6.9	0.8135
AT1G13160			ARM repeat superfamily protein...		Lus10036950 [exp]	8.5	0.8700
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Lus10012061 [exp]	8.9	0.8530
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Lus10041417 [exp]	9.2	0.8186

Compare expression of checked genes

Lus10037712 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.