Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20020 242 / 2e-76 unknown protein AT5G44780 165 / 8e-45 unknown protein AT1G11430 142 / 3e-40 plastid developmental protein DAG, putative (.1) AT3G06790 118 / 5e-31 plastid developmental protein DAG, putative (.1.2) AT2G33430 104 / 6e-26 DAL1, DAL differentiation and greening-like 1 (.1) AT1G32580 101 / 9e-25 plastid developmental protein DAG, putative (.1) AT2G35240 98 / 2e-23 plastid developmental protein DAG, putative (.1) AT3G15000 98 / 3e-22 cobalt ion binding (.1) AT1G72530 69 / 2e-13 plastid developmental protein DAG, putative (.1.2) AT1G53260 57 / 8e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035806 [exp] 432 / 2e-150 AT4G20020 278 / 4e-90 unknown protein Lus10036589 [exp] 419 / 9e-146 AT4G20020 271 / 1e-87 unknown protein Lus10018398 [exp] 144 / 2e-41 AT1G11430 309 / 2e-108 plastid developmental protein DAG, putative (.1) Lus10007615 [exp] 145 / 4e-41 AT1G11430 314 / 2e-109 plastid developmental protein DAG, putative (.1) Lus10016825 [exp] 134 / 2e-36 AT3G06790 286 / 1e-97 plastid developmental protein DAG, putative (.1.2) Lus10023744 [exp] 99 / 1e-23 AT1G32580 342 / 2e-120 plastid developmental protein DAG, putative (.1) Lus10011789 [exp] 99 / 1e-23 AT1G32580 341 / 5e-120 plastid developmental protein DAG, putative (.1) Lus10043130 [exp] 100 / 6e-23 AT3G15000 284 / 6e-92 cobalt ion binding (.1) Lus10014696 [exp] 99 / 1e-22 AT3G15000 291 / 1e-95 cobalt ion binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G015100 [exp] 258 / 7e-82 AT4G20020 239 / 2e-74 unknown protein Potri.004G218650 [exp] 207 / 2e-60 AT4G20020 187 / 5e-53 unknown protein Potri.004G218800 [exp] 195 / 1e-55 AT4G20020 182 / 8e-51 unknown protein Potri.011G032900 [exp] 143 / 2e-40 AT1G11430 261 / 1e-88 plastid developmental protein DAG, putative (.1) Potri.010G007200 [exp] 139 / 1e-38 AT3G06790 269 / 6e-91 plastid developmental protein DAG, putative (.1.2) Potri.008G169900 [exp] 101 / 9e-25 AT1G32580 284 / 2e-97 plastid developmental protein DAG, putative (.1) Potri.010G068300 [exp] 100 / 4e-24 AT1G32580 314 / 2e-109 plastid developmental protein DAG, putative (.1) Potri.011G112200 [exp] 97 / 5e-22 AT3G15000 245 / 2e-77 cobalt ion binding (.1) Potri.001G393400 [exp] 96 / 1e-21 AT3G15000 263 / 2e-84 cobalt ion binding (.1) Potri.008G022200 [exp] 53 / 2e-07 AT3G20930 427 / 3e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037713 pacid=23167255 polypeptide=Lus10037713 locus=Lus10037713.g ID=Lus10037713.BGIv1.0 annot-version=v1.0 ATGCTCCCCTACGCTTCCCCCGTTTCTTCGTCTCCGAAGTTGTTCTCCTTCTCCCAATCTCGTGGGTTCACTGGTTCAAGGGTATCGCTGGCGGGGGAAA AGAAGTATAAGCTGTACAAAGAAGGAGACGAGATCACGGAGGACACTGTACTCTTCGAAGGTTGTGATTTCAATCACTGGCTGATCACCGTTGATTTCCC CAAGGACCCTGCGCCCTCGCCCGAGGAGATGGTCGCCACTTATGAGAGAATCTGCGCTCAAGGACTCGGTGTTAGCATCGAGGAGGCCAATCAAAAGATG TATGCATGTAGCACAACTACTTATCAGGGGTTTCAAACTATAATGACCGAGAACGAATCTGAGAAATTCAAAGATGTACCTGGAGTTCTTTTTGTCTTAC CAGATTCCTACATTGATCCTGTAAACAAAGAGTATGGAGGAGACAAGTATGAAAACGGAGTGATTACGCACAGGCCTCCACCGGTACAGTACCGGAGGAA CGACAGATCGCGCCAACAGGGAAGTAGAAGATACGGCCAACAGGGTAACCCCGACTTCCGGCAACAAGGTTATCCTCAACATCAACAACAAGGACCAATG CGAGGGGATAATAGGAATAATGGACCTCCACAGAATTTCCCATCTCAACAACAGTTTGGTGCACCTCCTCCTCCACAAAACTACCCTCAACAAAGTTTCG GTGCTCAATCTCGACAGAATTTTGGTGCTCCGCAAAATAATTCTGGTGCTTCTCAACAGAGTTTTGGTGCTCAATCTGAACAGAATTTTGGTGCTCCGCG GAATAATTATGGTGCTCCTCAACAGAATTTTGGTGCTCTGCCGAACAATTATGGTTCTGGACAGCAAAACTATCCTCCTCATGGTGGCCAGATCCCGCTG AACGATAAGGCTAAGGATAGCCAGGGACAGCAGGGAAATTACTATCATCCAGCTCAAGGTGGTAATTATGGACCTCCTGGGCAGAGGGATCCTAGGGGAG ATGGTGGTAATTATTCACCCATGAATGGTGGAACCTACAGGCAAGGTGCAAATGTCAGCACTGGACGTGGTCATCCCGGTGAAGTTCAAGGATTTTCACA AATGGATCAGAGGAATACACAGGAAGGACGAGAAGACTACAGCCCTATGGGTCAGCCTGGCACCGATCAAGTACGTCTCTAG
AA sequence Show only first row Show all	>Lus10037713 pacid=23167255 polypeptide=Lus10037713 locus=Lus10037713.g ID=Lus10037713.BGIv1.0 annot-version=v1.0 MLPYASPVSSSPKLFSFSQSRGFTGSRVSLAGEKKYKLYKEGDEITEDTVLFEGCDFNHWLITVDFPKDPAPSPEEMVATYERICAQGLGVSIEEANQKM YACSTTTYQGFQTIMTENESEKFKDVPGVLFVLPDSYIDPVNKEYGGDKYENGVITHRPPPVQYRRNDRSRQQGSRRYGQQGNPDFRQQGYPQHQQQGPM RGDNRNNGPPQNFPSQQQFGAPPPPQNYPQQSFGAQSRQNFGAPQNNSGASQQSFGAQSEQNFGAPRNNYGAPQQNFGALPNNYGSGQQNYPPHGGQIPL NDKAKDSQGQQGNYYHPAQGGNYGPPGQRDPRGDGGNYSPMNGGTYRQGANVSTGRGHPGEVQGFSQMDQRNTQEGREDYSPMGQPGTDQVRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20020			unknown protein		Lus10037713 [exp]	0	1
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10043171 [exp]	2.2	0.8234
AT3G10520		ATGLB2, ARATHGL...	NON-SYMBIOTIC HAEMOGLOBIN 2, A...		Lus10038655 [exp]	6.0	0.7741
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10002601 [exp]	6.7	0.7527
AT4G18590			Nucleic acid-binding, OB-fold-...		Lus10022705 [exp]	9.2	0.7521
AT1G27190			Leucine-rich repeat protein ki...		Lus10010615 [exp]	10.4	0.6968
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10036590 [exp]	14.2	0.7414
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10033564 [exp]	14.4	0.7367
					Lus10029164 [exp]	18.7	0.6908
AT3G44220			Late embryogenesis abundant (L...		Lus10034175 [exp]	19.3	0.7108
					Lus10001343 [exp]	21.0	0.7201

Compare expression of checked genes

Lus10037713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.