Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16850 547 / 0 Pectin lyase-like superfamily protein (.1) AT5G49215 542 / 0 Pectin lyase-like superfamily protein (.1.2) AT3G06770 520 / 0 Pectin lyase-like superfamily protein (.1.2.3) AT3G62110 457 / 1e-158 Pectin lyase-like superfamily protein (.1) AT4G23820 403 / 9e-138 Pectin lyase-like superfamily protein (.1) AT5G41870 393 / 8e-134 Pectin lyase-like superfamily protein (.1) AT3G61490 391 / 1e-132 Pectin lyase-like superfamily protein (.1.2.3) AT4G23500 389 / 1e-131 Pectin lyase-like superfamily protein (.1) AT3G48950 385 / 1e-130 Pectin lyase-like superfamily protein (.1) AT2G23900 360 / 2e-120 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016837 [exp] 898 / 0 AT3G16850 557 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038030 [exp] 455 / 1e-157 AT3G62110 632 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10032374 [exp] 402 / 4e-137 AT4G23820 656 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003890 [exp] 391 / 7e-133 AT4G23820 657 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10007922 [exp] 391 / 1e-132 AT3G61490 743 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10039279 [exp] 378 / 2e-127 AT3G48950 624 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023101 [exp] 376 / 5e-127 AT4G23820 642 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10027516 [exp] 375 / 2e-126 AT3G48950 629 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10017517 [exp] 369 / 5e-124 AT4G23500 675 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G005500 [exp] 644 / 0 AT3G16850 497 / 1e-174 Pectin lyase-like superfamily protein (.1) Potri.008G211500 [exp] 639 / 0 AT3G16850 509 / 2e-179 Pectin lyase-like superfamily protein (.1) Potri.002G186900 [exp] 471 / 4e-164 AT3G62110 666 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G112100 [exp] 464 / 2e-161 AT3G62110 649 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G145900 [exp] 402 / 2e-137 AT3G48950 659 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G100000 [exp] 398 / 2e-135 AT4G23500 701 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G131700 [exp] 394 / 1e-133 AT3G61490 688 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.002G162400 [exp] 387 / 2e-131 AT3G61490 734 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.003G139100 [exp] 384 / 4e-130 AT4G23820 660 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G063400 [exp] 381 / 1e-128 AT4G33440 652 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10037714 pacid=23167344 polypeptide=Lus10037714 locus=Lus10037714.g ID=Lus10037714.BGIv1.0 annot-version=v1.0 ATGAAGATGCCAGTAGCATTGCTCCTGCTGCTGGCACTAATAAGCTTCTCAAATGGAGAAGAGGGAACAATAGAATGGAGCGATGGGAGATGCGATCACA AGCCGAGCTTACAGCCTAGGCCACACAGCGTTTCCATCTTGGAGTTTGGTGCCGTTGGGGATGGGAAAACATTGAACACCATAGCTTTCCAGAATGCTAT ATTCTACCTCAAGTCATTTGCAGACAAAGGCGGCGCTCAGCTTTATGTACCCGCTGGGAAATGGTTGACTGGAAGCTTCAACCTCACTAGCCACCTCACT CTCTTCCTTGCAAAGAATGCTGTCATCCTCGCTTCCCAGAACTCATCACATTGGGATCTGGTTGATGCTTTGCCATCCTACGGACGTGGGATTGAAGTTC CTGGGAGAAGGTACAGGAGTTTGATCAATGGATATAAGTTGAGGGATGTTGTAATAACCGGTGACGAAGGAACCATCGATGGCCAGGGCGCGGTGTGGTG GGATTGGTACGATACGCATTCGTTGAACTACAGCCGGCCTCATCTGGTCGAGTTCATCGAGTCCGAGAACATCGTGGTCTCGAATCTCACATTCGTCAAT GCGCCTGCTTACAGCATTCATCCAGTTTACTGCAGCCATGTCCTTGTTCAGAACATCTCGATATCCACCCCCTCGGAATCTCATGGCACAGTTGGGATCG TCCCAGATTCATCCAACAACATTTGCATAGAGGACAGCAGCATTGAGACAGGACATGATGCCATATCACTAAAGAGTGGGTGGGATGAATATGGCATCTC ATATGGCAGACCAACAACCGATGTCCACATTAGAGATGTCTATCTCAAGTCATTCTCCGGGTCCTGCATTGCCTTCGGAAGCGAGATGTCCGGAGGAATC TCGAATGTCCAGGTCGATCAAGCCTTCCTCCACAACTCAATTAGTGGAATCGAGCTGAGAACCACTCAAGGAAGAGGCGGTTACATCAAACATGTTATTG TATCAGACATCGAGCTGGTGAACATCACTACCGCATTCGGTGCTAGAGGTGATGTAGGGACCCATCCCGATGAAGAATTCGACCCTCGAGCTCTTCCTAC CGTCCAAGGAATCAGCTTTATGGATGTGGTCGGTTCGAACGTGACATTTGCCGGTAACTTCACCGGAATCGAACAAAGCCCCTTCACCTCAATATGCATG GTGAATGTGACATTGACACCGGAGCCATCATGGGTGTGCTTGAATGTTGATGGCTTCTCCGAGAGTGTCTCTCCATCACCGTGCCCTCAGCTATCGAATC CGGTCACAGGTTCGTCGTCCTGCTACACCATCACCATGGATTCTTATGCTAAATCCGCCAGCTTATGA
AA sequence Show only first row Show all	>Lus10037714 pacid=23167344 polypeptide=Lus10037714 locus=Lus10037714.g ID=Lus10037714.BGIv1.0 annot-version=v1.0 MKMPVALLLLLALISFSNGEEGTIEWSDGRCDHKPSLQPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPAGKWLTGSFNLTSHLT LFLAKNAVILASQNSSHWDLVDALPSYGRGIEVPGRRYRSLINGYKLRDVVITGDEGTIDGQGAVWWDWYDTHSLNYSRPHLVEFIESENIVVSNLTFVN APAYSIHPVYCSHVLVQNISISTPSESHGTVGIVPDSSNNICIEDSSIETGHDAISLKSGWDEYGISYGRPTTDVHIRDVYLKSFSGSCIAFGSEMSGGI SNVQVDQAFLHNSISGIELRTTQGRGGYIKHVIVSDIELVNITTAFGARGDVGTHPDEEFDPRALPTVQGISFMDVVGSNVTFAGNFTGIEQSPFTSICM VNVTLTPEPSWVCLNVDGFSESVSPSPCPQLSNPVTGSSSCYTITMDSYAKSASL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16850			Pectin lyase-like superfamily ...		Lus10037714 [exp]	0	1
AT1G49750			Leucine-rich repeat (LRR) fami...		Lus10019830 [exp]	1.7	0.9375
AT3G28180		ATCSLC4, CSLC4,...	CELLULOSE-SYNTHASE LIKE C4, Ce...		Lus10039440 [exp]	2.2	0.9389
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10005327 [exp]	4.2	0.9383
AT3G20300			Protein of unknown function (D...		Lus10009722 [exp]	7.5	0.9264
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10028780 [exp]	8.8	0.9199
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10038435 [exp]	9.2	0.9187
AT5G11420			Protein of unknown function, D...		Lus10035910 [exp]	11.2	0.9207
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Lus10023485 [exp]	12.2	0.9068
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10023995 [exp]	12.3	0.8894
AT1G47740			PPPDE putative thiol peptidase...		Lus10040485 [exp]	13.9	0.8812

Compare expression of checked genes

Lus10037714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.