Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16100 290 / 1e-94 Protein of unknown function (DUF789) (.1) AT5G49220 281 / 5e-91 Protein of unknown function (DUF789) (.1) AT1G15030 263 / 2e-84 Protein of unknown function (DUF789) (.1) AT2G01260 253 / 1e-80 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) AT1G03610 204 / 1e-62 Protein of unknown function (DUF789) (.1) AT4G03420 199 / 2e-60 Protein of unknown function (DUF789) (.1) AT4G28150 172 / 2e-50 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT1G17830 164 / 1e-46 Protein of unknown function (DUF789) (.1) AT1G73210 162 / 4e-46 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT5G23380 124 / 4e-32 Protein of unknown function (DUF789) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016841 [exp] 729 / 0 AT4G16100 310 / 2e-102 Protein of unknown function (DUF789) (.1) Lus10037717 [exp] 657 / 0 AT4G16100 321 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10016842 [exp] 491 / 4e-174 AT4G16100 272 / 8e-89 Protein of unknown function (DUF789) (.1) Lus10018572 [exp] 193 / 7e-58 AT4G03420 405 / 1e-142 Protein of unknown function (DUF789) (.1) Lus10038327 [exp] 170 / 6e-49 AT1G73210 319 / 1e-108 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Lus10031632 [exp] 160 / 5e-46 AT4G03420 345 / 2e-119 Protein of unknown function (DUF789) (.1) Lus10036189 [exp] 152 / 1e-41 AT1G73210 298 / 2e-99 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Lus10033707 [exp] 143 / 6e-39 AT4G03420 359 / 2e-124 Protein of unknown function (DUF789) (.1) Lus10039803 [exp] 131 / 4e-35 AT1G03610 303 / 2e-103 Protein of unknown function (DUF789) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G000700 [exp] 474 / 2e-166 AT5G49220 342 / 3e-115 Protein of unknown function (DUF789) (.1) Potri.008G213300 [exp] 466 / 1e-163 AT5G49220 338 / 2e-113 Protein of unknown function (DUF789) (.1) Potri.008G124000 [exp] 288 / 4e-94 AT2G01260 384 / 1e-132 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.010G120700 [exp] 279 / 2e-90 AT2G01260 367 / 1e-125 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.013G144000 [exp] 204 / 2e-62 AT4G03420 414 / 2e-146 Protein of unknown function (DUF789) (.1) Potri.019G103000 [exp] 189 / 3e-56 AT4G03420 427 / 2e-151 Protein of unknown function (DUF789) (.1) Potri.018G152500 [exp] 184 / 2e-54 AT1G17830 321 / 3e-109 Protein of unknown function (DUF789) (.1) Potri.017G155200 [exp] 182 / 9e-54 AT1G17830 328 / 9e-112 Protein of unknown function (DUF789) (.1) Potri.017G152601 [exp] 85 / 2e-17 AT1G03610 95 / 9e-21 Protein of unknown function (DUF789) (.1) Potri.004G068700 [exp] 84 / 4e-17 AT1G73210 100 / 2e-22 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05623 [flax] [poplar] DUF789 Protein of unknown function (DUF789)
Representative CDS sequence Show only first row Show all	>Lus10037716 pacid=23167330 polypeptide=Lus10037716 locus=Lus10037716.g ID=Lus10037716.BGIv1.0 annot-version=v1.0 ATGTCAGGCTCCGGTGGCGTGAAAGTTTCCAGAGCTCGCGGAGATGCCCGATTCTATGTTTCCCCAGGCATGCGCAAGCCTCAGGAGCAGCAGCAGCAGC AGCAACGGAGCAAGCTGCAGCGCAATAGCAGCCACCAGAAACAGCAGCAGAAGCAGACGCCAATTAATGGTTCTGTTCCTGATATCGATAAGAGGGCCGA CGCCGATCAATGCCGTTCGTCCTCCTCTTCCTCCACCGCCTCTAATTGTTCCGCCGTCCCTGATCGGCCTATTCCGCAAGGTGTCTACAGCAATTTGGAT CGGTTCTTGGCGTTCACCACTCCTGCTGTCCCTGCCCAATTCTTACCCAAGACTAGCCTGAAAGAATGGAGGCGTGGCGACCTGCACCAACACCCCTACT TTGTTTTGGGTGATTTGTGGGAGTCTTTCCGGGAGTGGAGTGCATTTGGTGTGGGTGTTCCCCTCCTTTTGAATGGTAGCGAGGCAGTAATCCAGTACTA TGTTCCTTACCTCTCGGCCATTCAATTGTATAGGGATCCGTCAAAACAATCCACCAGGCTAAGGCGGACTGGTGAGGATAGAGATGCAGAATCATCTAGG GAAACAAGTAGTAATGGTAGCAGTGAGTTTGGAACAGATGGAGGCACAAATAATGGTGCGAGTGGGCTATGGAGCCAGCAAAATGGTAATGTTGCTAGTA TTCCAAGTCTGAATGGACTTACTTTGAGACATAAGCCGTCTAGGGGATCATCTGGTGACGAATGTGAAAGTTCTAGTCCCCCTGTTGAACTTGTGTTTGA GTATATGGAGCGTGCCTCACCTTTCACTCGTCAGCCATTGGCAGAGCAGATTTCAGATCTTGCTTCTCAGTTTCCAGAACTTCAAACATTCAAGAGCTGT GAACTTTCTGATTCAAGTTGGATGTCTGTGGCCTGGTACCCAATCTACAGGATACCTGTGGGTCAAACGCTACAAAATCTGGATGCCTGCTTTTTGACTT TCCATTCTCTGTCAACGCCCTTAACCCCAGAAGGTCGAAACACAGATGGATTTCAACTTCACAGCTCCAGCATTAAGGAGGTTCAATGTGCCGACACTTC TAAGCTAGTTTTGTATAGCTTTGGTCTTGCCTCGTATAAGTTGAAGGTCTCGTTCTGGGAGCCAAATGGAAGTCAAGACTGTCAGAAAGCAAGCTCACTT CTTCGAGCTGCTGATACCTGGCTAAGGCTATTGGAAGTGAATCATCCAGATTATAGCTTCTTCGTTTCACACAACTCGGGCTGGAGGTGA
AA sequence Show only first row Show all	>Lus10037716 pacid=23167330 polypeptide=Lus10037716 locus=Lus10037716.g ID=Lus10037716.BGIv1.0 annot-version=v1.0 MSGSGGVKVSRARGDARFYVSPGMRKPQEQQQQQQRSKLQRNSSHQKQQQKQTPINGSVPDIDKRADADQCRSSSSSSTASNCSAVPDRPIPQGVYSNLD RFLAFTTPAVPAQFLPKTSLKEWRRGDLHQHPYFVLGDLWESFREWSAFGVGVPLLLNGSEAVIQYYVPYLSAIQLYRDPSKQSTRLRRTGEDRDAESSR ETSSNGSSEFGTDGGTNNGASGLWSQQNGNVASIPSLNGLTLRHKPSRGSSGDECESSSPPVELVFEYMERASPFTRQPLAEQISDLASQFPELQTFKSC ELSDSSWMSVAWYPIYRIPVGQTLQNLDACFLTFHSLSTPLTPEGRNTDGFQLHSSSIKEVQCADTSKLVLYSFGLASYKLKVSFWEPNGSQDCQKASSL LRAADTWLRLLEVNHPDYSFFVSHNSGWR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16100			Protein of unknown function (D...		Lus10037716 [exp]	0	1
AT5G65540			unknown protein		Lus10035950 [exp]	5.0	0.7246
AT4G32250			Protein kinase superfamily pro...		Lus10009358 [exp]	6.0	0.6672
AT3G54620	bZIP	BZO2H4, ATBZIP2...	BASIC LEUCINE ZIPPER O2 HOMOLO...		Lus10018759 [exp]	11.8	0.6496
AT4G03000			RING/U-box superfamily protein...		Lus10041246 [exp]	15.5	0.6861
AT5G20200			nucleoporin-related (.1)		Lus10019408 [exp]	15.7	0.6864
AT4G16100			Protein of unknown function (D...		Lus10016841 [exp]	15.9	0.6948
AT5G01160			RING/U-box superfamily protein...		Lus10017185 [exp]	28.5	0.6524
AT4G23460			Adaptin family protein (.1)		Lus10017508 [exp]	35.3	0.6595
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10009279 [exp]	37.2	0.6739
AT5G48385			FRIGIDA-like protein (.1)		Lus10002146 [exp]	38.6	0.6718

Compare expression of checked genes

Lus10037716 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.