Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49220 261 / 3e-80 Protein of unknown function (DUF789) (.1) AT4G16100 257 / 7e-79 Protein of unknown function (DUF789) (.1) AT1G15030 247 / 2e-75 Protein of unknown function (DUF789) (.1) AT2G01260 235 / 5e-71 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) AT1G03610 172 / 3e-48 Protein of unknown function (DUF789) (.1) AT4G03420 161 / 3e-44 Protein of unknown function (DUF789) (.1) AT4G28150 149 / 4e-40 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT1G73210 145 / 1e-38 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT1G17830 145 / 4e-38 Protein of unknown function (DUF789) (.1) AT3G05700 103 / 7e-25 Drought-responsive family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037716 [exp] 600 / 0 AT4G16100 311 / 4e-103 Protein of unknown function (DUF789) (.1) Lus10016841 [exp] 574 / 0 AT4G16100 310 / 2e-102 Protein of unknown function (DUF789) (.1) Lus10016842 [exp] 498 / 2e-172 AT4G16100 272 / 8e-89 Protein of unknown function (DUF789) (.1) Lus10017097 [exp] 172 / 2e-49 AT5G49230 131 / 2e-38 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Lus10037819 [exp] 163 / 4e-46 AT5G49230 198 / 3e-64 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Lus10018572 [exp] 166 / 9e-46 AT4G03420 405 / 1e-142 Protein of unknown function (DUF789) (.1) Lus10038327 [exp] 154 / 3e-41 AT1G73210 319 / 1e-108 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Lus10031632 [exp] 137 / 1e-35 AT4G03420 345 / 2e-119 Protein of unknown function (DUF789) (.1) Lus10036189 [exp] 136 / 2e-34 AT1G73210 298 / 2e-99 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G000700 [exp] 412 / 1e-138 AT5G49220 342 / 3e-115 Protein of unknown function (DUF789) (.1) Potri.008G213300 [exp] 408 / 9e-137 AT5G49220 338 / 2e-113 Protein of unknown function (DUF789) (.1) Potri.008G124000 [exp] 276 / 2e-86 AT2G01260 384 / 1e-132 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.010G120700 [exp] 254 / 1e-77 AT2G01260 367 / 1e-125 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.013G144000 [exp] 174 / 7e-49 AT4G03420 414 / 2e-146 Protein of unknown function (DUF789) (.1) Potri.019G103000 [exp] 168 / 2e-46 AT4G03420 427 / 2e-151 Protein of unknown function (DUF789) (.1) Potri.018G152500 [exp] 166 / 8e-46 AT1G17830 321 / 3e-109 Protein of unknown function (DUF789) (.1) Potri.017G155200 [exp] 166 / 1e-45 AT1G17830 328 / 9e-112 Protein of unknown function (DUF789) (.1) Potri.010G000800 [exp] 157 / 4e-44 AT5G49230 190 / 5e-61 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1) Potri.008G213400 [exp] 151 / 6e-42 AT5G49230 196 / 2e-63 HYPERSENSITIVE TO RED AND BLUE, Drought-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05623 [flax] [poplar] DUF789 Protein of unknown function (DUF789) CL0361 [flax] [poplar] C2H2-zf PF05605 [flax] [poplar] zf-Di19 Drought induced 19 protein (Di19), zinc-binding
Representative CDS sequence Show only first row Show all	>Lus10037717 pacid=23167341 polypeptide=Lus10037717 locus=Lus10037717.g ID=Lus10037717.BGIv1.0 annot-version=v1.0 ATGTCGGGCTCTAGTGGGTCTAAAAGTTCCAGAGCCCGCGGAGAAGGCCGATTTTATGTCCCCCCCGGCATGCGCAAGCCTCAGGAGCAGCAGCAGCAGC AGCAACGGAGCAAGCAGCAGCCCCGTAATAGCAGCCATCAGAGACAGCAGCAAAAGCAGACTCCAATCAATGGTTCTGTGCCTGAGATCGATAAGAGGGC TGACGCTGATCAATGCCGTTCGTCCTCCTCTTCCTCCACCGTTTCTAATTGTTCGGCTGTCCCCGATCGGCCGATTCCACCAAGTGACTGCAGCAATTTG GATCGGTTTTTGACGTACACCACTCCTGCTGTCCCTGCCCAACACTTACCAAAGACTAGTGTTAAAGAATGGAGGCGTGGTGGAGAGCTGCACCAACCCT ACTTTGTTTTGGGTGATTTATGGGAGTCTTTCGGTGAGTGGAGTGCATTTGGTGTTGGCGTTCCCCTGCTTTTGAATGGAACCGAAGCTGTAATCCAGTA CTATGTTCCGTACCTCTCTGGCATTCAATTGTATAAGGATCCATCAAAACAATCCACCAGGCCAAGGCGGGCTGGTGAGGACAGTGATACAGAATCTTCT AGGGAAACAAGTAGTGATGGTAGCAGTGAGTTCGGTACAGACCGAGGTACAAGTAATGGTGCAGGTAGGCTATGGAGCCAGCAAAATGGTAACGTTGCTA GTATTCCAAGTCTGAATGGACTTACTTTGAGACATAAGCCGTCCAGGGGATCATCTAGTGATGAATGTGAAATTTCCAGTCCCCGTGGTCAACTTGTGTT TGAGTATATGGAGAGTGCCTCACCTTTCACTCGTCAGCCATTAGCAGAGCAGATTTCAGATCTTGCATCTCAATTCCCAGAACTTCGAACATTGAAAAGC TGCGAACTTTCTGATTCAAGTTGGATGTCTGTGGCCTGGTACCCAATCTACAGGATACCTGTGGGCCAAACACTACAAAATCTGGATGCCTGCTTTTTGA CTTTCCATTCTCTGTCAACGCTCTCAACCACAGAAGGTAGAAACACAGATGGATTCCAACTTCACAGCTCCAGCATTAAGGAAGTTCAATGTGCCGACAC TTGTAAGCTACTTTTGTATAGCTTTGGTCTCGCCTCGTATAAGTTGAAGGTCTCATTCTGGAACCCAAATGGAAGCGAAGACGGTCAGAAAGCAAGCTCA CTTCGTCGAGCTGCTGAAACCTGGCTAAGGCTGTTGGAAGTGAATCATCCAGATTATATCTTCTTCGTTTCGCACAACTCAGGGGGTTGGTTATGTGCAA AAAGACTCAAATGGGTGGTAGAAAGTGTCTGCCTTGGAATAAAGGGTGTTGAAGATACATACATAAGAACCATCCGTGGAGTTGGTGGAGAAAGAACTAC CCTCTCTCTCCTCCTCCTCCTGCTCCCTCTCTCACACTATCAATTTCCAGTCCGGCGATCAGCTGAAGTCAGCCCTTCCATTTCGGGTTCCGATCGGAAT TTGCTAGCTCAATTTCGTCTAATGGCTTCCGATACCTGGAGCTCTCGCTTGTCCGCTTCTTCTCGTCGTTACCAAATGAAGCCCAATGTATTTGAAGAAG CGGACGTAGACGATGATCCCAAAGCTGAGTTCATGTGCCCTTTTTGCGCCGAGGATTTTGATGTATTGGGGCTTTGTTGTCATGTGGACGAGGAGCATCC TGTTGAGACCAAAGATGGGCGCAAAAGAAGATTGCGTAAAGGCGGAACAAACTCGACATTGTCGATATTGAGGAAAGAACTCCGTGATAGCACCTTACAG ACTCTCCTAGGGGGATCTTCATACTTGATTCCCAGCTCAGAACCAGATCCGTTGCTTTCGTCATTCATGTTCCATCCGTCCGTGGTTGTTGAGCCTTGGA GTGTTCTACCCGCTGAAACAAGTCCAGCAAAAGAGTGCACCATCGATGAATCAGTAATGAGGGAAGCATCGGTATTGGCATCGGCATCGGCATCGGCATC GGTGGTTTGGGATGAGGAGCAGGAGGAGAAGTATCGGAGGTGTGAGTTTGTCAGAGGGCTGACGGTGTCCACCATTCTTGATGAGTTATAA
AA sequence Show only first row Show all	>Lus10037717 pacid=23167341 polypeptide=Lus10037717 locus=Lus10037717.g ID=Lus10037717.BGIv1.0 annot-version=v1.0 MSGSSGSKSSRARGEGRFYVPPGMRKPQEQQQQQQRSKQQPRNSSHQRQQQKQTPINGSVPEIDKRADADQCRSSSSSSTVSNCSAVPDRPIPPSDCSNL DRFLTYTTPAVPAQHLPKTSVKEWRRGGELHQPYFVLGDLWESFGEWSAFGVGVPLLLNGTEAVIQYYVPYLSGIQLYKDPSKQSTRPRRAGEDSDTESS RETSSDGSSEFGTDRGTSNGAGRLWSQQNGNVASIPSLNGLTLRHKPSRGSSSDECEISSPRGQLVFEYMESASPFTRQPLAEQISDLASQFPELRTLKS CELSDSSWMSVAWYPIYRIPVGQTLQNLDACFLTFHSLSTLSTTEGRNTDGFQLHSSSIKEVQCADTCKLLLYSFGLASYKLKVSFWNPNGSEDGQKASS LRRAAETWLRLLEVNHPDYIFFVSHNSGGWLCAKRLKWVVESVCLGIKGVEDTYIRTIRGVGGERTTLSLLLLLLPLSHYQFPVRRSAEVSPSISGSDRN LLAQFRLMASDTWSSRLSASSRRYQMKPNVFEEADVDDDPKAEFMCPFCAEDFDVLGLCCHVDEEHPVETKDGRKRRLRKGGTNSTLSILRKELRDSTLQ TLLGGSSYLIPSSEPDPLLSSFMFHPSVVVEPWSVLPAETSPAKECTIDESVMREASVLASASASASVVWDEEQEEKYRRCEFVRGLTVSTILDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16100			Protein of unknown function (D...		Lus10037717 [exp]	0	1
AT5G49230		HRB1	HYPERSENSITIVE TO RED AND BLUE...		Lus10037819 [exp]	2.0	0.9147
AT2G26230			uricase / urate oxidase / nodu...		Lus10008952 [exp]	9.8	0.9140
AT1G21770			Acyl-CoA N-acyltransferases (N...		Lus10025670 [exp]	10.0	0.8975
AT4G25030			unknown protein		Lus10036514 [exp]	10.8	0.9184
AT5G04260		WCRKC2	WCRKC thioredoxin 2 (.1)		Lus10037975 [exp]	15.2	0.8714
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10037131 [exp]	23.0	0.8859
AT3G29170			Eukaryotic protein of unknown ...		Lus10028939 [exp]	23.2	0.8711
AT1G72390			unknown protein		Lus10013170 [exp]	27.2	0.8984
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Lus10012632 [exp]	28.5	0.8844
AT4G28400			Protein phosphatase 2C family ...		Lus10018618 [exp]	29.1	0.8828

Compare expression of checked genes

Lus10037717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.