Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008963 [exp] 64 / 7e-13 AT1G66240 81 / 5e-20 homolog of anti-oxidant 1 (.1.2.3) Lus10008962 [exp] 41 / 0.0001 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12274 [flax] [poplar] DUF3615 Protein of unknown function (DUF3615)
Representative CDS sequence Show only first row Show all	>Lus10037718 pacid=23167036 polypeptide=Lus10037718 locus=Lus10037718.g ID=Lus10037718.BGIv1.0 annot-version=v1.0 ATGGGAGAGCCGCAGATCGAAGAAACGCAGACGGTGGTGGATCGGGAGATTATTATCCCGTTGTTCAACAAGCAAGCTCCGCAGCACCCACCTTGGAAGG GTAAATCGAAAGCTCAAGCTATGAAAGAGATGTTTGAAAAGCTACGAAAAAAACTTGCAAAAGCGACTTTGAACTATTTGGAGAACAAGGGTGTCCATTA TGAGCTTGAGAGCACCATGCCCACTTGCAATTTTGTTGATTTTGCAAATCGTAAGGGTTTCATGCATGGAAACTTTACTGCTATAAAGAAATCAGACAAA AGCTCCGGGGAAAGGCCTCCAGCTGAAATGTTTTTTGCTGAGGCAGTGTATAAGAAGGATGGGTTTGGGCTGGACATCAGTTGTTGGAGCATCGTTGATC CTGCTGAAAAGGGACGTTGTGAGTATTGTTCTATGAACGATTATGAGATTCGCCATCCTCTCGCAACAAACTCCTTTACTTCTGGAACCCAGAGAAAGTG A
AA sequence Show only first row Show all	>Lus10037718 pacid=23167036 polypeptide=Lus10037718 locus=Lus10037718.g ID=Lus10037718.BGIv1.0 annot-version=v1.0 MGEPQIEETQTVVDREIIIPLFNKQAPQHPPWKGKSKAQAMKEMFEKLRKKLAKATLNYLENKGVHYELESTMPTCNFVDFANRKGFMHGNFTAIKKSDK SSGERPPAEMFFAEAVYKKDGFGLDISCWSIVDPAEKGRCEYCSMNDYEIRHPLATNSFTSGTQRK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10037718 [exp]	0	1
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Lus10017820 [exp]	29.8	0.6729
AT2G20990		SYT1, NTMC2TYPE...	SYNAPTOTAGMIN 1, ARABIDOPSIS T...		Lus10019782 [exp]	64.8	0.5942
AT5G45290			RING/U-box superfamily protein...		Lus10001683 [exp]	65.4	0.6287
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Lus10029687 [exp]	73.8	0.6192
AT5G63670		SPT42	SPT4 homolog 2 (.1.2)		Lus10020394 [exp]	131.8	0.5948

Compare expression of checked genes

Lus10037718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.