Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16120 826 / 0 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT3G16860 780 / 0 COBL8 COBRA-like protein 8 precursor (.1) AT5G49270 769 / 0 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G20580 701 / 0 COBL10 COBRA-like protein 10 precursor (.1) AT4G27110 653 / 0 COBL11 COBRA-like protein 11 precursor (.1) AT3G29810 139 / 2e-35 COBL2 COBRA-like protein 2 precursor (.1) AT5G60920 132 / 5e-33 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT5G15630 132 / 6e-33 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G02210 124 / 3e-30 COBL1 COBRA-like protein 1 precursor (.1) AT1G09790 115 / 5e-27 COBL6 COBRA-like protein 6 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016847 [exp] 1217 / 0 AT4G16120 860 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10025045 [exp] 681 / 0 AT4G16120 675 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10011160 [exp] 660 / 0 AT3G20580 804 / 0.0 COBRA-like protein 10 precursor (.1) Lus10043065 [exp] 653 / 0 AT3G20580 791 / 0.0 COBRA-like protein 10 precursor (.1) Lus10010022 [exp] 596 / 0 AT4G16120 581 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10012598 [exp] 145 / 2e-37 AT3G02210 697 / 0.0 COBRA-like protein 1 precursor (.1) Lus10034379 [exp] 142 / 2e-36 AT3G02210 685 / 0.0 COBRA-like protein 1 precursor (.1) Lus10031972 [exp] 140 / 7e-36 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10035131 [exp] 140 / 1e-35 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G001100 [exp] 941 / 0 AT4G16120 854 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Potri.014G125300 [exp] 790 / 0 AT4G16120 766 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Potri.011G135200 [exp] 706 / 0 AT3G20580 807 / 0.0 COBRA-like protein 10 precursor (.1) Potri.001G419000 [exp] 697 / 0 AT3G20580 804 / 0.0 COBRA-like protein 10 precursor (.1) Potri.004G219200 [exp] 145 / 2e-37 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1) Potri.004G117200 [exp] 137 / 6e-35 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060100 [exp] 134 / 1e-33 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060000 [exp] 130 / 3e-32 AT5G60920 759 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117100 [exp] 129 / 5e-32 AT3G02210 724 / 0.0 COBRA-like protein 1 precursor (.1) Potri.004G167100 [exp] 127 / 3e-31 AT3G29810 407 / 2e-139 COBRA-like protein 2 precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04833 [flax] [poplar] COBRA COBRA-like protein
Representative CDS sequence Show only first row Show all	>Lus10037720 pacid=23167115 polypeptide=Lus10037720 locus=Lus10037720.g ID=Lus10037720.BGIv1.0 annot-version=v1.0 ATGCCGCCGTCAGCTATCTCCTTCTCTCTAGCTCTCGCCGTCTTCCTCTTCTTCCTACCGTTTCGCACAATTTCCCAGACGACGCCTCCTGCTCCGGCGG GGGCGGGGGATGACGCCGCTCCGGCACCCGCGGCGGACAACTGCAACGGGATCTTCTTGTCTTACCGCTACGGGTCCGGATCCAAGATCAGACCTACTGA TCCGAAACACCAGCCTTACCGATTCGAGTCCACCCTCACTGTTCAGAACAACGGGATCGAGAAGCTCAAGTCCTGGCAGGCCTTTGTAGGGTTTAAGCAC GACGAGATCCTCGTCTCTGGCAGCAATGCGATTCTAGCTGATGGCTCCAGCTACCCTGCTTTAGTCGGGAACGGCACCGTTTTCGCTGGTTTCCCTATGA CTGACTTGAAGACCGCGATTGAGACCGCTGGCGACTCGACTCAGACTTCCGTCGAGGTTAAGCTTTTGGGGACTCAGTTCGGTGTCAAGCCGCCGGCGAT TCCTTGGCCTAATAATATTACTCTGGTGAATGATGGATGGTCTTGCCCTGCTCCCACCACTCTAGGGGGTGCTATGTCGACTTGCTGTGTGAAAGATGAG AAAGCGAAATCGAACATCACATTACTTGATGGAGATTTCTTGCCTCGCCAGAGTGGCGATTTGACAATAGCTTACGATGTGATCCGAGCTTATGATTCCA GTTACTGGGCCCAAGTTACCATCACCAACCACAATCACTTGGGCCGTCTTGATAACTGGAAACTCAGCTGGGACTGGATGCAGGACGAATTTATCAACTC AATGAAGGGTGCGTATCCTTCGATTGTAGATTCGTCTCCCTGCATATTTGGTCCACAGGGTGAATACTACAAGCAACTGGACTTCTCCACCGTGCTGAAC TGTGAAAGGAGACCTACGATTATTGATCTGCCACCAACAAAGTTCAATGACACGACCCTTGGAATGGTCCCTTTCTGTTGCCGCAATGGCACAATCTTGC CACCATCTATGGATCCAAGCAAGTCGGCCTCTTCTTTCCAGATGCAGGTGTTCAAAATGCCTCCTAATCTGAACCGCTCGGAGCTTTCGCCCCCACAGAA CTGGAAGATCAATGGCACATTGAACCCTGATTATCAATGTGGACCTCCTGTTAGGGTGAGCGCAAGTGAGTTCCTGGACCCAAGTGGTTTACCGTCGAAT TCTACTGCAGTTGCTACTTGGCAGGTGGTGTGTAACATCACGAAACAGAAGGGATCAAGCCCTGGATCGACCCCTCGTTGCTGCGTTTCATTCTCCGCAT TCTACAACGACTCGGTTGTCCCGTGCAATACCTGTGCTTGTGGGTGCCCTAATAGAGCAGCTTCTCAGACTTGCAGTGCAAATACTCCGGCGGTTCTTCT TCCGCCCAATGCTCTCCTGGTTCCTTTCGAGAATCGTTCCGCCATGACCTCTGCTTGGGCCAACATCAAGCGTCGAGCACTCCCCAACCCGATGCCATGT GCTGATAACTGCGGGGTGAGCATCAATTGGCATGTGAATACTGATTTCAGTCGAGGATGGAGTTCTAGGATCACGCTCTTCAACTGGGCGGAGATTCCTT TCCCTGATTGGTTTGTCGCCGTCGAAATGGACAAAGCAGCCGGAGGGTTCGAAGCCATGTATTCGTTTAACGGAACCATGCTGCCAAATTCCAATAACAC CATATTCATGCAGGGTCTTCCGGGACTGAACTACCTAGTCGGGGAGACTGATGGTCTCAACCCAAGCAAGGATCCGAGAGTCCCCGGAAAACAGCAGTCT GTGGTCTCATTTACCAAGAGAACCACACCTGGAATTAATGTGCCACTCGGAGATGGTTTCCCTACTAAAGTGTTCTTCAATGGGGAAGAATGTTCTCTTC CTACAATGTACCCAACGAGCAGCGTTAACCGAAGGGCTCCTGTGACGATTCTGTCTCTAATACTAGGAACATTGGTGGCAGCATCCCTACTGAGGCAGGA TCTATGGTAG
AA sequence Show only first row Show all	>Lus10037720 pacid=23167115 polypeptide=Lus10037720 locus=Lus10037720.g ID=Lus10037720.BGIv1.0 annot-version=v1.0 MPPSAISFSLALAVFLFFLPFRTISQTTPPAPAGAGDDAAPAPAADNCNGIFLSYRYGSGSKIRPTDPKHQPYRFESTLTVQNNGIEKLKSWQAFVGFKH DEILVSGSNAILADGSSYPALVGNGTVFAGFPMTDLKTAIETAGDSTQTSVEVKLLGTQFGVKPPAIPWPNNITLVNDGWSCPAPTTLGGAMSTCCVKDE KAKSNITLLDGDFLPRQSGDLTIAYDVIRAYDSSYWAQVTITNHNHLGRLDNWKLSWDWMQDEFINSMKGAYPSIVDSSPCIFGPQGEYYKQLDFSTVLN CERRPTIIDLPPTKFNDTTLGMVPFCCRNGTILPPSMDPSKSASSFQMQVFKMPPNLNRSELSPPQNWKINGTLNPDYQCGPPVRVSASEFLDPSGLPSN STAVATWQVVCNITKQKGSSPGSTPRCCVSFSAFYNDSVVPCNTCACGCPNRAASQTCSANTPAVLLPPNALLVPFENRSAMTSAWANIKRRALPNPMPC ADNCGVSINWHVNTDFSRGWSSRITLFNWAEIPFPDWFVAVEMDKAAGGFEAMYSFNGTMLPNSNNTIFMQGLPGLNYLVGETDGLNPSKDPRVPGKQQS VVSFTKRTTPGINVPLGDGFPTKVFFNGEECSLPTMYPTSSVNRRAPVTILSLILGTLVAASLLRQDLW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10037720 [exp]	0	1
AT4G32840		PFK6	phosphofructokinase 6 (.1)		Lus10005488 [exp]	4.9	0.7812
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10038449 [exp]	7.3	0.7917
AT1G69420			DHHC-type zinc finger family p...		Lus10036798 [exp]	7.4	0.7996
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10030454 [exp]	11.2	0.7714
AT1G69420			DHHC-type zinc finger family p...		Lus10037133 [exp]	14.7	0.7855
AT4G18260			Cytochrome b561/ferric reducta...		Lus10007333 [exp]	21.2	0.7572
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10023357 [exp]	21.6	0.7614
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10036016 [exp]	22.8	0.7186
AT5G42200			RING/U-box superfamily protein...		Lus10017253 [exp]	26.5	0.7143
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10011149 [exp]	29.9	0.7625

Compare expression of checked genes

Lus10037720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.