Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16143 837 / 0 IMPA-2 importin alpha isoform 2 (.1.2) AT3G06720 830 / 0 IMPA1, IMPA-1, AIMPALPHA, ATKAPALPHA, AT-IMP importin alpha isoform 1 (.1.2) AT1G09270 745 / 0 IMPA-4 importin alpha isoform 4 (.1.2.3) AT1G02690 726 / 0 IMPA-6 importin alpha isoform 6 (.1.2) AT4G02150 720 / 0 IMPA-3, MOS6, ATIMPALPHA3 MODIFIER OF SNC1, 6, IMPORTIN ALPHA ISOFORM 3, IMPORTIN ALPHA 3, ARM repeat superfamily protein (.1) AT5G49310 620 / 0 IMPA-5 importin alpha isoform 5 (.1) AT3G05720 581 / 0 IMPA-7 importin alpha isoform 7 (.1) AT5G52000 392 / 3e-132 IMPA-8 importin alpha isoform 8 (.1) AT1G32880 177 / 9e-53 ARM repeat superfamily protein (.1) AT5G03070 164 / 2e-44 IMPA-9 importin alpha isoform 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016850 [exp] 979 / 0 AT4G16143 858 / 0.0 importin alpha isoform 2 (.1.2) Lus10031398 [exp] 892 / 0 AT3G06720 925 / 0.0 importin alpha isoform 1 (.1.2) Lus10010933 [exp] 882 / 0 AT3G06720 922 / 0.0 importin alpha isoform 1 (.1.2) Lus10036452 [exp] 840 / 0 AT4G16143 825 / 0.0 importin alpha isoform 2 (.1.2) Lus10010028 [exp] 824 / 0 AT3G06720 862 / 0.0 importin alpha isoform 1 (.1.2) Lus10036330 [exp] 823 / 0 AT3G06720 874 / 0.0 importin alpha isoform 1 (.1.2) Lus10041124 [exp] 733 / 0 AT4G16143 733 / 0.0 importin alpha isoform 2 (.1.2) Lus10001480 [exp] 181 / 1e-50 AT5G03070 729 / 0.0 importin alpha isoform 9 (.1) Lus10008480 [exp] 175 / 2e-48 AT5G03070 738 / 0.0 importin alpha isoform 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G214100 [exp] 889 / 0 AT4G16143 881 / 0.0 importin alpha isoform 2 (.1.2) Potri.005G020400 [exp] 877 / 0 AT3G06720 880 / 0.0 importin alpha isoform 1 (.1.2) Potri.010G001400 [exp] 876 / 0 AT4G16143 849 / 0.0 importin alpha isoform 2 (.1.2) Potri.013G010900 [exp] 875 / 0 AT3G06720 869 / 0.0 importin alpha isoform 1 (.1.2) Potri.014G124200 [exp] 811 / 0 AT3G06720 868 / 0.0 importin alpha isoform 1 (.1.2) Potri.002G199600 [exp] 795 / 0 AT3G06720 858 / 0.0 importin alpha isoform 1 (.1.2) Potri.013G007300 [exp] 770 / 0 AT1G09270 877 / 0.0 importin alpha isoform 4 (.1.2.3) Potri.016G086600 [exp] 169 / 5e-46 AT5G03070 801 / 0.0 importin alpha isoform 9 (.1) Potri.002G052700 [exp] 63 / 3e-10 AT5G19330 994 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.005G210000 [exp] 61 / 1e-09 AT5G19330 977 / 0.0 ARM repeat protein interacting with ABF2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat CL0020 [flax] [poplar] TPR PF01749 [flax] [poplar] IBB Importin beta binding domain
Representative CDS sequence Show only first row Show all	>Lus10037722 pacid=23167369 polypeptide=Lus10037722 locus=Lus10037722.g ID=Lus10037722.BGIv1.0 annot-version=v1.0 ATGTCTCTGAGGCCAAACGCCAGGACCGACATTCGTCGGAACAGGTACAAGGTCGCCGTCGACGCTGATGAAGGTCGGCGGAGGAGAGAGGATACTATGG TTGAGATCCGGAAGAACAAGCGCGAGGAGAACTTGATGAAGAAGCGCCGGGAAGGACTTCAGGCGCACCAGCTCACGGCATCAGCTCTGCCTGGTGCTAT GGAGAAAAAGTTGGAAAGCTTGCCTGCTCTGGTTTCTAGCATCTGGTCTGACGATGGTAACCTCCAGCTTGAAGCCACAACTCAATTCCGAAAGCTTCTC TCAATTGAAAGAAGTCCTCCAATCGAGGAGGTTATTCAGTCTGGTGTCGTTCCTCGCTTTGTGGAGTTTCTCGTCAGGGAGGATTTCCCTCAGCTTCAGT TCGAAGCTGCTTGGGCTCTCACCAATATTGCGTCTGGTACCTCTGAGAATACCAAAGTTGTGATTGATCATGATGCTGTTCCAATATTTGTTAAGCTTCT AGGGTCTTCCAGTGACGATGTACGGGAGCAGGCCGTGTGGGCTTTGGGTAATGTTGCTGGTGATTCCCCAAAATGCCGTGACCTTGTCTTGAGTCGTGGA GCACTAATACCGCTTCTGGCTCAATTGAATGAACATGCTAAGCTTTCCATGTTGAGGAATGCCACTTGGACATTATCAAACTTCTGTAGGGGCAAGCCTC AACCTCCTTTTGACCAGGTGAGGCCAGCACTTCCTGCACTTGCACATCTTGTGTGCTCATCTGATGAGGAAGTCCTGACGGATGCATGCTGGGCGCTATC CTATCTTTCTGATGGTACAAATGATAAAATCCAAGCTGTGATTGAAGCTGGTGTCTGCAGTAAACTTGTTCAACTTCTCCTCCATCCATCTCCATCAGTG CTTGTGCCTGCCCTTCGTACGATTGGAAACATTGTAACAGGGGATGATTCACAGACTCAGTGTATAATTGGCCATAATGCACTTCCTTGCCTTCTCAACC TGTTGAACCAAAACTTTAAGAAGAGCATCAAGAAAGAAGCTTGCTGGACCATCTCAAACATTACAGCAGGAAACAAGGAACAGATTCAGGCTGTGATTGA GGCTGGTCTCATTGGACCTCTAGTTAACTTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTCTCTCTAATGCTACTTCTGGTGGT ACCCATGAACAAATCAAGTATCTGGTGAGCCAGGGATGCATAAAACCATTGTGTGATCTCCTTGTCTGCCCCGATCCAAGAATTGTCACAGTATGCCTTG AAGGGCTAGAGAATATCTTGAAGGTTGGAGAAGCAGAGAAGAACGCAGGAAACAGTGAAGTCAATGTGTTTGCCCAGATGATCGATGATGCTGAGGGACT TGAGAAGATAGAAAATCTCCAGAGCCACGATAACAATGAGATTTACGAGAAGGCAGTCAAGATTTTGGAGATGTATTGGTTGGAGGAAGAAGATGAGGCA TTACCTCCCGGTGACAGTAACCAGCAACAAGGTTTCCAGTTTGGTGGAAATGACCACCCTGTTCCTTCCGGTGGCTTCAACTTCGGTTGA
AA sequence Show only first row Show all	>Lus10037722 pacid=23167369 polypeptide=Lus10037722 locus=Lus10037722.g ID=Lus10037722.BGIv1.0 annot-version=v1.0 MSLRPNARTDIRRNRYKVAVDADEGRRRREDTMVEIRKNKREENLMKKRREGLQAHQLTASALPGAMEKKLESLPALVSSIWSDDGNLQLEATTQFRKLL SIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHDAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLSRG ALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAHLVCSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSKLVQLLLHPSPSV LVPALRTIGNIVTGDDSQTQCIIGHNALPCLLNLLNQNFKKSIKKEACWTISNITAGNKEQIQAVIEAGLIGPLVNLLQNAEFDIKKEAAWALSNATSGG THEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNAGNSEVNVFAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILEMYWLEEEDEA LPPGDSNQQQGFQFGGNDHPVPSGGFNFG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10037722 [exp]	0	1
AT5G43960			Nuclear transport factor 2 (NT...		Lus10022873 [exp]	3.0	0.8658
AT5G07900			Mitochondrial transcription te...		Lus10040819 [exp]	4.2	0.8492
AT3G18190			TCP-1/cpn60 chaperonin family ...		Lus10008670 [exp]	5.2	0.8459
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10031410 [exp]	6.0	0.8449
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10011379 [exp]	8.4	0.8225
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Lus10016850 [exp]	9.5	0.8242
AT2G03640			Nuclear transport factor 2 (NT...		Lus10037066 [exp]	13.5	0.8364
AT4G27585			SPFH/Band 7/PHB domain-contain...		Lus10032909 [exp]	15.2	0.8395
AT2G16595			Translocon-associated protein ...		Lus10012169 [exp]	16.1	0.8093
AT1G75990			PAM domain (PCI/PINT associate...		Lus10025072 [exp]	18.0	0.8016

Compare expression of checked genes

Lus10037722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.