Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49320 276 / 1e-93 Protein of unknown function (DUF1218) (.1) AT1G13380 45 / 2e-05 Protein of unknown function (DUF1218) (.1) AT1G68220 41 / 0.0003 Protein of unknown function (DUF1218) (.1) AT1G61065 40 / 0.0005 Protein of unknown function (DUF1218) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016851 [exp] 473 / 2e-171 AT5G49320 301 / 2e-103 Protein of unknown function (DUF1218) (.1) Lus10018474 [exp] 44 / 2e-05 AT1G61065 219 / 2e-73 Protein of unknown function (DUF1218) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G140400 [exp] 308 / 5e-106 AT5G49320 304 / 1e-104 Protein of unknown function (DUF1218) (.1) Potri.008G108900 [exp] 302 / 8e-104 AT5G49320 281 / 2e-95 Protein of unknown function (DUF1218) (.1) Potri.T170901 [exp] 302 / 8e-104 AT5G49320 281 / 2e-95 Protein of unknown function (DUF1218) (.1) Potri.004G038700 [exp] 47 / 2e-06 AT1G61065 205 / 6e-68 Protein of unknown function (DUF1218) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06749 [flax] [poplar] DUF1218 Protein of unknown function (DUF1218)
Representative CDS sequence Show only first row Show all	>Lus10037723 pacid=23167296 polypeptide=Lus10037723 locus=Lus10037723.g ID=Lus10037723.BGIv1.0 annot-version=v1.0 ATGACACAAGGAAGAGCAGTCACCCATGACGATCTCACACCAGGTCTTGGAAACTCTGATTTGGGCAGCACAACAGCCGTCTCAATTATGCTCCTTACAA TTCTCTCTGGCATCTTCTGCTTCTCTCTCTGCCTCATTGCTGAAGCCTCTCGTTCACAGGCTACGTGGGGGGAGAATCGTCAATGCGTGTACAGTGGCAG TGGAGAAACTCCATTGCTGTGTGGAGCTATTGCGTTCATCGGATTGGCTGTGGCTATGGTGACTGAACATACTTATCTATTGATTGCAGTTAGCAAAGCT CCCCCTGTTGTTCTCATCGCTTGGGACCCTAACTATGCCCCTTCCAAGGATGTCACTTGGCAAGCTGGAGCCTTTTTCCTCACTACTTGGGTGAGCTTTG CGGTGGCGGAAATCCTGCTGTTGATAGGACTGAGCGTGGAATCGGGACACCTGAAGAGTTGGGAAACACCAAAGCAGAGCTGCTTGGTGATCAGGGAAGG AGTGTTCGCTGCCGCCGGAGTGTTTTCCCTCCTCACTGTTTTGCTTGCCGGCGGGTTATACCTAACTGCATTTCGTGCACAGAGAATATCCCAAGATCAA GAAAACGTGCGACGGCAGATACTTGAAGTGTCTGTCCTCTACGCTTCCCCGCCGAGAACACCGCGGCGTGATCACATCGTGGCGGCGGAGAGAGAAGACC CTGTTCGTTGGGAGAGCCAGGCTGATCATCTTTCGATCGCTTTGCCGCCTGGCTTGATCAAGCAAATGGGGTTCTTGTAA
AA sequence Show only first row Show all	>Lus10037723 pacid=23167296 polypeptide=Lus10037723 locus=Lus10037723.g ID=Lus10037723.BGIv1.0 annot-version=v1.0 MTQGRAVTHDDLTPGLGNSDLGSTTAVSIMLLTILSGIFCFSLCLIAEASRSQATWGENRQCVYSGSGETPLLCGAIAFIGLAVAMVTEHTYLLIAVSKA PPVVLIAWDPNYAPSKDVTWQAGAFFLTTWVSFAVAEILLLIGLSVESGHLKSWETPKQSCLVIREGVFAAAGVFSLLTVLLAGGLYLTAFRAQRISQDQ ENVRRQILEVSVLYASPPRTPRRDHIVAAEREDPVRWESQADHLSIALPPGLIKQMGFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49320			Protein of unknown function (D...		Lus10037723 [exp]	0	1
AT5G03560			Tetratricopeptide repeat (TPR)...		Lus10012049 [exp]	1.4	0.9157
AT5G43950			Plant protein of unknown funct...		Lus10024955 [exp]	3.3	0.8804
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10012284 [exp]	3.5	0.8932
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10004703 [exp]	4.0	0.8749
AT1G61930			Protein of unknown function, D...		Lus10020047 [exp]	7.1	0.8947
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10010844 [exp]	7.9	0.8849
AT4G38225			unknown protein		Lus10026560 [exp]	9.6	0.8898
AT4G16380			Heavy metal transport/detoxifi...		Lus10000039 [exp]	9.8	0.8864
AT4G27610			unknown protein		Lus10043458 [exp]	13.4	0.8719
AT5G05200			Protein kinase superfamily pro...		Lus10012864 [exp]	13.8	0.8882

Compare expression of checked genes

Lus10037723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.