Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58650 146 / 6e-36 unknown protein AT5G26910 146 / 9e-36 unknown protein AT3G05750 117 / 1e-26 unknown protein AT1G67040 55 / 2e-07 unknown protein AT3G53540 50 / 6e-06 unknown protein AT1G74160 49 / 2e-05 unknown protein AT2G45900 47 / 5e-05 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016854 [exp] 493 / 2e-166 AT3G58650 134 / 2e-33 unknown protein Lus10029857 [exp] 165 / 8e-42 AT3G58650 345 / 2e-105 unknown protein Lus10020689 [exp] 163 / 3e-41 AT5G26910 350 / 2e-107 unknown protein Lus10033565 [exp] 62 / 2e-09 AT1G67040 236 / 3e-66 unknown protein Lus10017607 [exp] 60 / 8e-09 AT1G67040 179 / 7e-47 unknown protein Lus10036356 [exp] 44 / 0.0005 AT4G00440 241 / 6e-68 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G140900 [exp] 790 / 0 AT3G58650 235 / 4e-65 unknown protein Potri.008G108600 [exp] 790 / 0 AT3G58650 234 / 6e-65 unknown protein Potri.T171201 [exp] 785 / 0 AT3G58650 235 / 3e-65 unknown protein Potri.005G019700 [exp] 423 / 8e-134 AT5G26910 417 / 4e-132 unknown protein Potri.013G010500 [exp] 374 / 3e-115 AT5G26910 371 / 6e-115 unknown protein Potri.017G116000 [exp] 78 / 2e-14 AT1G67040 317 / 3e-94 unknown protein Potri.004G098300 [exp] 75 / 2e-13 AT1G67040 339 / 2e-102 unknown protein Potri.014G084600 [exp] 55 / 3e-07 AT4G00440 395 / 4e-124 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.002G160000 [exp] 45 / 0.0003 AT4G00440 351 / 6e-107 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.006G213700 [exp] 45 / 0.0003 AT3G53540 433 / 1e-136 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037725 pacid=23167062 polypeptide=Lus10037725 locus=Lus10037725.g ID=Lus10037725.BGIv1.0 annot-version=v1.0 ATGGAGAAAGGTGGGTTCTTTCAGCTGTTTGACTGGTCTGCCAAATCCAGGAAGAAGCTCTTCTCAAGCAAATCCGACTTACCAGAACGATCGAAAAAAG GGAAGCGCAGTGATGGGAGCTTTCCAATGACACGGCTTCGTTTGATGGACTACGAACATGGAGCTGGATCGAGCATTGGCGAGTACAGCTGTGCATCTTC GGTAACAGACGATGATGGTTATGGAGCTAGGCCAGCTGGGGTGGTAGCCAAGCTTATGGGACTCGATTCTATGCCCACTTCCAGTTTCCCTGAGTCGAAT TGCAACGCGTTTTTCGATACTCAGTCGCTTAGGGAAGCTTCTCACGGAGCTAAACAGTTTGCTAATTACCATCATGAGTATCACAGCATGCATTCAGGTG ATCTGAAGCTGATGGAATCGTCTAGGCCTAGAAAGGCGGTAAGCAGACCGATCGAGAAGTTCCAGACTGAGATGCTGCCTCCGAAATCGGCCAAGTCAAT CCCCATCACACATCATAAACTTCTATCACCTATAAAGAGAGCCAATTTCGTCTCGAGTAATACTGCTGCTCACATAATGGAAGAAGCTGCAAAGATCATC ATCGAGCCTAGTCCTGCAAAGCCAAAGATGACCGGTGTTGGATCTTCTTCATCAGCACCACCCTTGAAAGTTCGCAACTTGAAATCGAGACTCGAGGCTA CTCAGAGAACGCCTATATCCGGCTCATCTGCACTGAGAGCCACCCGTGATATGAAGGAAAAACTCGAACCTGCTCCGAGAACTTCCAGGATTGCAGAATC GTTTCGAAAACCTGCCGAGTCAAATGCTGCCAAGTGCCTAAAGGGGCAACCTTTGAACAAAAGTTGGAACGGACCGGCTGATTCAGCATCTTCGAGAGTT TCTCATGAGCCTGGGGAAGGATCATCTTCTTCTTCAGGTCAAAAGAGCAAGGGAAAGTCTGTCTCACTGTCTTTTCAAGCAAAGGTAAATGTACAGAGAA GAGAAGGGCTGAATCCGAATGGGGGTCGAGATCTTGTACAGCAATTGAGAGAACAAAGTGAAGATGTGACAAGCCAACCATTCAGGAGCGAAACGAATTT CCAGAAGAGTTCTTCAGCTAATAAGAGGCAATCGTCGTCTCCAAGTGCTTATGGAGTTCTTAGACAGAACAGCCAGAAACAGAATTGTTCATTGGACAAA GAGAAATCATCATCCTCGAAGCCTTCCAGTTCCAGTAGAAAAGCAAACTCAGTGAATCCTTATGGGAGACCTAGAACTTCAGGCAAAACTGCTAGCTCGT CCAAATACGGGGCGAAGAAATCAGGCACAGATGAGGCAGGTTCTTCAAACTGCATTGTAAAGAACACGCCGAGGAAGAAACGGTCGCTCGATGGAAATTT GCAATTCGACAACAATCAGACTGTTCTTGACAGCATGTTGATTGAACAAAAGGAAGAAGAATGTCACGATTCGGCTGCTGGCAAAAGAAACTTTAGTTGG ACAGAAGAGAGCAAAAGGAAAGAAGGGACTGATGTCGTTTCATTCACATTCACCACTCCTCTTGCACGATCTACACCTGGTTTTGAAACACCTAGTCGTA AAGATAACGGTGTTTGCATTGACGGTCGAAGTAAGAGGTTGTTGCTCGACACAGAAACCATGAAGATATCTTCATCAGTGGGATACAATGTAGTAGGAGG AAATGACTTGAGCGCACTTTTGGAGCAGAAGTTGAGGGAACTAAGCGATGCTGTCGAGTCTTCGAACCGAAATGCTATTAACAACAAAGCAGGATCAGCC CCCAATTCTGTTGCGCCAAAGAGCAAGGATCAGATTGTATCCCCTGATCCTGTGTCGTATAGATTCCAACCAATAATGTTTCAGGGAGTTGATGCTATGG AAGAATGTAGCAGCAGCAGCAAATATGACTGCAGACGTCCAAGTCCGATCTCGGTTCTTGACTATTCTTTCTCAACTGAAAGCAGCTGCACATTAGAGAG TATGGACTACTGTAGCAGTACAGAGGGAGGCAAGCAGTGTTTATCTTCCATTCAAGCACAAGAAGTCCTTGGCCTTACCTTTCTTCAAAAGAAACATCAT CACCACCCAGACACAGAGCTACTAGATTCTGCTTCATCGACAAGCTCCAGAATCGCGTCTCTCGCTCGTACAAACAGATCATCCGGCAGTGATAAATCGA GCGATTGGGAGGTTGAATATGTCAAAAGATTGCTTGTTTACCTGGACTTGATGTTCCATGACTTCGCCATTGGCAGATGCAGCGAGGTCATGAATCCCCA CCTCTTCGATCAACTGGAGGTTGGAAATCACTTCGACCACCGGACTAGGCTAGAAAAAAGGGCACTGTTCGACTGCGTGAGCGAGTGTCTGGACTTACGA TGCAGCAGATATATCGGCGGAGGATACAATGCGTGGTCGAAAGGGACGACAGTGATGAGCAGAAAGGACAGATTGGCTGAAGAATTGCGGAGAGAGATAG TAACGTGGAGGAAAATGGGGGACTGCATGGTCGATGAGCTCGTCGACAAGGACATGAGCAGCCAATATGGGAATTGGCTCGACTATAAGGTAGATGCATT TGGAGTTGGAGCAGAGATTGAAGAGTTAATATTTAACTCCTTGGTTGATGAGTTAGTCGCCGATATCCGGCCCCAAAAACTTACAGACAAGAGGAGATTC ATATGA
AA sequence Show only first row Show all	>Lus10037725 pacid=23167062 polypeptide=Lus10037725 locus=Lus10037725.g ID=Lus10037725.BGIv1.0 annot-version=v1.0 MEKGGFFQLFDWSAKSRKKLFSSKSDLPERSKKGKRSDGSFPMTRLRLMDYEHGAGSSIGEYSCASSVTDDDGYGARPAGVVAKLMGLDSMPTSSFPESN CNAFFDTQSLREASHGAKQFANYHHEYHSMHSGDLKLMESSRPRKAVSRPIEKFQTEMLPPKSAKSIPITHHKLLSPIKRANFVSSNTAAHIMEEAAKII IEPSPAKPKMTGVGSSSSAPPLKVRNLKSRLEATQRTPISGSSALRATRDMKEKLEPAPRTSRIAESFRKPAESNAAKCLKGQPLNKSWNGPADSASSRV SHEPGEGSSSSSGQKSKGKSVSLSFQAKVNVQRREGLNPNGGRDLVQQLREQSEDVTSQPFRSETNFQKSSSANKRQSSSPSAYGVLRQNSQKQNCSLDK EKSSSSKPSSSSRKANSVNPYGRPRTSGKTASSSKYGAKKSGTDEAGSSNCIVKNTPRKKRSLDGNLQFDNNQTVLDSMLIEQKEEECHDSAAGKRNFSW TEESKRKEGTDVVSFTFTTPLARSTPGFETPSRKDNGVCIDGRSKRLLLDTETMKISSSVGYNVVGGNDLSALLEQKLRELSDAVESSNRNAINNKAGSA PNSVAPKSKDQIVSPDPVSYRFQPIMFQGVDAMEECSSSSKYDCRRPSPISVLDYSFSTESSCTLESMDYCSSTEGGKQCLSSIQAQEVLGLTFLQKKHH HHPDTELLDSASSTSSRIASLARTNRSSGSDKSSDWEVEYVKRLLVYLDLMFHDFAIGRCSEVMNPHLFDQLEVGNHFDHRTRLEKRALFDCVSECLDLR CSRYIGGGYNAWSKGTTVMSRKDRLAEELRREIVTWRKMGDCMVDELVDKDMSSQYGNWLDYKVDAFGVGAEIEELIFNSLVDELVADIRPQKLTDKRRF I

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26910			unknown protein		Lus10037725 [exp]	0	1
AT3G58650			unknown protein		Lus10016854 [exp]	3.0	0.9627
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10003800 [exp]	3.0	0.9695
AT4G14330			P-loop containing nucleoside t...		Lus10011804 [exp]	3.9	0.9666
AT5G27550			P-loop containing nucleoside t...		Lus10004487 [exp]	4.9	0.9683
AT1G71680			Transmembrane amino acid trans...		Lus10036933 [exp]	5.7	0.9663
AT3G05330		ATN ,ATTAN	A. THALIANA TAN1, TANGLED, cyc...		Lus10004488 [exp]	6.0	0.9556
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10037593 [exp]	6.5	0.9656
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10012225 [exp]	7.3	0.9263
AT3G15550			unknown protein		Lus10035906 [exp]	7.4	0.9659
AT4G35730			Regulator of Vps4 activity in ...		Lus10028383 [exp]	8.8	0.9592

Compare expression of checked genes

Lus10037725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.