Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49340 432 / 4e-149 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1) AT3G12060 396 / 2e-133 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT1G60790 391 / 1e-131 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT5G06700 391 / 1e-130 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT5G20590 340 / 2e-112 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT3G62390 326 / 3e-107 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT5G19160 281 / 1e-89 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT3G06080 279 / 4e-89 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G34070 257 / 1e-81 TBL37 TRICHOME BIREFRINGENCE-LIKE 37 (.1) AT1G29050 255 / 5e-81 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021066 [exp] 387 / 4e-129 AT5G06700 671 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10013035 [exp] 380 / 2e-127 AT1G60790 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10016856 [exp] 341 / 1e-116 AT5G49340 155 / 7e-45 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Lus10011932 [exp] 335 / 5e-111 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10027637 [exp] 332 / 2e-109 AT5G20590 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10029126 [exp] 327 / 9e-107 AT1G60790 527 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10002430 [exp] 325 / 3e-106 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10004159 [exp] 288 / 4e-91 AT5G06700 552 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10041219 [exp] 276 / 7e-88 AT5G19160 514 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G108500 [exp] 465 / 1e-161 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.T171301 [exp] 465 / 1e-161 AT5G49340 461 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.001G010900 [exp] 397 / 6e-134 AT5G06700 472 / 5e-161 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.006G193900 [exp] 395 / 6e-132 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.016G059300 [exp] 389 / 7e-130 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.010G043300 [exp] 384 / 1e-128 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.006G071500 [exp] 343 / 1e-113 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.018G133000 [exp] 336 / 8e-111 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.002G195800 [exp] 330 / 1e-107 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.008G203900 [exp] 275 / 7e-88 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10037726 pacid=23167146 polypeptide=Lus10037726 locus=Lus10037726.g ID=Lus10037726.BGIv1.0 annot-version=v1.0 ATGGAATCTTTGACGAAGCTCACGATCACCACCCTCACAAACCCAAGAATCCATCTCTACGGAATCGCTCCCTTCTTGTTGCTGATCACCTTCCTCTGCC TGTCGCCTTCCTTCTTCTTCTTCACTGCCACCACCAATGACTCCGGCGCCGGCGCCGCCTCCTTTTCTTCCGCTTCCCGCCTTTTCTCCGTCGACGCGAA CTACGACGAATCCCTCTCTTCTTTCTCTCCTGTCGATTCTTCTTCCAACACTTGCCCCGTCGTCTCGGAATGCCCGACGCTCTCTTCTGTCGCCGCAGCT ACAGAATTTATCCCTCGCTGGAAATCCAGAAACGAAGACGAGTTCGTGACTCGGCCCACTTCTTGCAACATCTTCAACGGGAGTTGGGTCCCCGACGACT CGGATCCGGTTTACCCGCCCGGTTCATGCCCCTTCCTCGACGATTCGTTCAATTGCTTCAAGAACGGCCGCGCCGACTTGGGTTATCTCCGGTTCCGCTG GAAGCCGTACGGATGCGACATTCCAAGGTTTAACGGTAGAAAGATGCTGGAGATTATGAGAGGGAAGAGAGTGGTATTCGTGGGAGATTCTTTGAACAGG AACATGTGGCAAGCTTTGGTGTGCTCGTTGCGAGAATCGGTGAAGAACAAGAGCGGAATCTTTGAAGAGTTCGGCAGAAGGGAGTTCAGAACTCAGGGAT TCTACTCTGTGAAATTCACTGAATTCAACTGCACGTTGGACTTCGTGAAATCGCCATTCCTAGTACAGGAATGGAAGCAGGATTCGAATAGAACAACAAC AGCAGGGATGAATCGGAAGAAAAGGGAAACCCTGAGGCTTGACATGGTACAGAGCAGTTTCTCTGACTATAGAAATGCTGACGTGATCGTGTTCAACACC GGACACTGGTGGACTCACAAGAAAACCAACAGAGGTAAGAATTACTACCAAGAAGGCAGCCACGTGTATAGCAAGCTGCAAGTGAGTGAAGCGTACAAGA AAGCACTGTGGACGTGGGCCCAGTGGGTTGATTCCAACATCAACGCTAGCAGTACCAAAGTGTTCTTCCGTGGATACTCTGCTTCTCACTTCAGTGGGCA GGGGTGCGGCGGCGGGATCGTGAATGAGACGACGAGGGAGGTTAGAGAGAATCGGTGGATGATGAAGGCGGTTGAAACGGTGGTATCGGAGATGAAGACG CCGGTGTACTACATGAATATTACTAAAATGACATCGTATAGGCGAGATGGGCATCCGTGGATTTATCATGATCGGAGAGGTGGTGGTACTGGTGGGAAGT TTGAGGACTGTAGTCATTGGTGTCTTCCTGGGGTTCCAGACTCGTGGAATCAGCTTTTATACGTTGCTCTCTTGCCGCCATCTTGA
AA sequence Show only first row Show all	>Lus10037726 pacid=23167146 polypeptide=Lus10037726 locus=Lus10037726.g ID=Lus10037726.BGIv1.0 annot-version=v1.0 MESLTKLTITTLTNPRIHLYGIAPFLLLITFLCLSPSFFFFTATTNDSGAGAASFSSASRLFSVDANYDESLSSFSPVDSSSNTCPVVSECPTLSSVAAA TEFIPRWKSRNEDEFVTRPTSCNIFNGSWVPDDSDPVYPPGSCPFLDDSFNCFKNGRADLGYLRFRWKPYGCDIPRFNGRKMLEIMRGKRVVFVGDSLNR NMWQALVCSLRESVKNKSGIFEEFGRREFRTQGFYSVKFTEFNCTLDFVKSPFLVQEWKQDSNRTTTAGMNRKKRETLRLDMVQSSFSDYRNADVIVFNT GHWWTHKKTNRGKNYYQEGSHVYSKLQVSEAYKKALWTWAQWVDSNINASSTKVFFRGYSASHFSGQGCGGGIVNETTREVRENRWMMKAVETVVSEMKT PVYYMNITKMTSYRRDGHPWIYHDRRGGGTGGKFEDCSHWCLPGVPDSWNQLLYVALLPPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49340		TBL4	TRICHOME BIREFRINGENCE-LIKE 4 ...		Lus10037726 [exp]	0	1
AT2G28085			SAUR-like auxin-responsive pro...		Lus10021435 [exp]	1.4	0.9972
AT5G60330			unknown protein		Lus10018274 [exp]	1.7	0.9970
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10016284 [exp]	2.0	0.9970
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10033738 [exp]	2.8	0.9916
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008935 [exp]	3.5	0.9857
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10022506 [exp]	4.2	0.9817
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10029872 [exp]	4.5	0.9882
					Lus10032468 [exp]	4.9	0.9782
AT4G03010			RNI-like superfamily protein (...		Lus10033744 [exp]	5.7	0.9818
AT1G68470			Exostosin family protein (.1)		Lus10005567 [exp]	5.8	0.9709

Compare expression of checked genes

Lus10037726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.