Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49350 133 / 2e-37 Glycine-rich protein family (.1.2) AT1G56320 110 / 3e-29 unknown protein AT4G16146 89 / 6e-22 cAMP-regulated phosphoprotein 19-related protein (.1) AT1G69510 74 / 3e-16 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) AT5G64130 71 / 3e-15 cAMP-regulated phosphoprotein 19-related protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016857 [exp] 285 / 3e-96 AT5G49350 138 / 3e-40 Glycine-rich protein family (.1.2) Lus10041125 [exp] 122 / 2e-33 AT5G49350 99 / 2e-25 Glycine-rich protein family (.1.2) Lus10031407 [exp] 79 / 7e-17 ND 85 / 1e-20 Lus10030448 [exp] 72 / 4e-15 AT1G69510 123 / 1e-36 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) Lus10026615 [exp] 72 / 7e-15 AT1G69510 123 / 1e-36 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) Lus10036768 [exp] 68 / 5e-14 AT5G64130 116 / 6e-35 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) Lus10009146 [exp] 66 / 4e-13 AT5G64130 150 / 2e-48 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) Lus10010927 [exp] 67 / 5e-12 AT1G56140 343 / 2e-107 Leucine-rich repeat transmembrane protein kinase (.1) Lus10037162 [exp] 66 / 9e-12 AT1G69523 268 / 4e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G108400 [exp] 158 / 4e-47 AT5G49350 138 / 9e-41 Glycine-rich protein family (.1.2) Potri.005G019200 [exp] 115 / 5e-31 AT1G56320 130 / 4e-39 unknown protein Potri.008G108201 [exp] 105 / 5e-28 AT4G16146 103 / 4e-30 cAMP-regulated phosphoprotein 19-related protein (.1) Potri.010G141300 [exp] 95 / 3e-24 AT4G16146 105 / 3e-31 cAMP-regulated phosphoprotein 19-related protein (.1) Potri.010G167000 [exp] 77 / 8e-17 AT1G69510 104 / 4e-29 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) Potri.017G102700 [exp] 73 / 7e-16 AT5G64130 159 / 1e-51 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) Potri.004G111900 [exp] 70 / 1e-14 AT5G64130 152 / 4e-49 cAMP-regulated phosphoprotein 19-related protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04667 [flax] [poplar] Endosulfine cAMP-regulated phosphoprotein/endosulfine conserved region
Representative CDS sequence Show only first row Show all	>Lus10037727 pacid=23167319 polypeptide=Lus10037727 locus=Lus10037727.g ID=Lus10037727.BGIv1.0 annot-version=v1.0 ATGGCGGATTGCGGCGGAAACCTCCAGGTTGGACAGAAGTACGGTGGGCTTGCACCAAAGAAGAAGCCATTGATTGCAAAGGACAATGAACGTGCATTCT TCGATTCAGCGGATTGGGCTCTTTGTAAGCAAGGATCAGGGATAAGTAGTGCGACGTCGACGGTGGTAGCTATAGAAACCTTGCAGCCTAAATTACAGAG AACGCCACATCAGCAGCTACCGCCTAGAAGGCCAGCTTGTACACCCCCCCCCCCCACCACTAACGTTAATTCGATCATAGTCAACATTCCTCTCGAGAAA GGAGCTAAGTGTTCACCGAAACAAGATACTGACATCTGCCAACTCCGTCTATCGGAAAGAATCTACTGCAGCAAGTTTCTACTGTGCAACTCCAGGGCTG ATACTTCAAAGCAGTCAAGATTTGAACTTTACAAGCTGATGATCGATATGACAGGAAAGGCAGATGTAGATGCACCTTACTTGGACGTTGGAAACCGTGG AAGCTCAGGAACCTCTTCGACCTCCTCCTCGTCTTCCTCTTCAGGCAGCGATGACGATACGGGCAGTAGTCATCATGCTGACGATCCTGCCCAAATCGTC GCGAGAGCTTTGGTATGCTTCAATGATAGGAAGATATACAGAACTTGCGATGAAGACTACAGGCTGAACGAGAGCGGGAGGCTGAGCGTTCCACTGGATC AAGTGGATGCCTACTGCGGCGGGCCATGCTTTTCGGAGACAAACTTGGTGCTAGACTGCGTAGAAGGGATAATGGAGAATTTCGTATTCTATAACACTGC CACGATTGAGGATGTTAAGGACACCATGAAGGCAGGGTGCAGTGATGGTCCCGATCGAGGCAATTTCGATGTGTCGGAGCACCTTGAAGCTTCTCAAAGC ACTGTTGTGAAGTCTGCAAGTGGAATCCTCTTATTGTCTGCTCTTGTTTCCGCCACTGCTGTTGCTCAGGCTTGGTGA
AA sequence Show only first row Show all	>Lus10037727 pacid=23167319 polypeptide=Lus10037727 locus=Lus10037727.g ID=Lus10037727.BGIv1.0 annot-version=v1.0 MADCGGNLQVGQKYGGLAPKKKPLIAKDNERAFFDSADWALCKQGSGISSATSTVVAIETLQPKLQRTPHQQLPPRRPACTPPPPTTNVNSIIVNIPLEK GAKCSPKQDTDICQLRLSERIYCSKFLLCNSRADTSKQSRFELYKLMIDMTGKADVDAPYLDVGNRGSSGTSSTSSSSSSSGSDDDTGSSHHADDPAQIV ARALVCFNDRKIYRTCDEDYRLNESGRLSVPLDQVDAYCGGPCFSETNLVLDCVEGIMENFVFYNTATIEDVKDTMKAGCSDGPDRGNFDVSEHLEASQS TVVKSASGILLLSALVSATAVAQAW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49350			Glycine-rich protein family (....		Lus10037727 [exp]	0	1
AT5G49360		ATBXL1, BXL1	beta-xylosidase 1 (.1)		Lus10037728 [exp]	1.0	0.9454
AT1G49475	B3		AP2/B3-like transcriptional fa...		Lus10007192 [exp]	6.9	0.7491
					Lus10002348 [exp]	8.4	0.7480
AT3G63060		EDL3	EID1-like 3 (.1)		Lus10028001 [exp]	9.8	0.7428
					Lus10039495 [exp]	12.0	0.7365
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10028217 [exp]	16.7	0.7355
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Lus10004520 [exp]	18.9	0.7780
AT5G62360			Plant invertase/pectin methyle...		Lus10027199 [exp]	20.5	0.7361
AT1G15670			Galactose oxidase/kelch repeat...		Lus10029329 [exp]	23.7	0.6630
AT5G67140			F-box/RNI-like superfamily pro...		Lus10024178 [exp]	27.0	0.7387

Compare expression of checked genes

Lus10037727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.