Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49360 176 / 4e-52 ATBXL1, BXL1 beta-xylosidase 1 (.1) AT1G02640 171 / 2e-50 ATBXL2, BXL2 beta-xylosidase 2 (.1) AT5G64570 164 / 1e-47 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) AT5G09730 159 / 5e-46 ATBXL3, XYL3, BXL3, ATBX3 beta-xylosidase 3 (.1) AT3G19620 154 / 4e-44 Glycosyl hydrolase family protein (.1) AT1G78060 133 / 7e-37 Glycosyl hydrolase family protein (.1) AT5G10560 122 / 9e-33 Glycosyl hydrolase family protein (.1) AT3G62710 49 / 2e-07 Glycosyl hydrolase family protein (.1) AT3G47000 47 / 9e-07 Glycosyl hydrolase family protein (.1) AT5G20950 41 / 0.0001 Glycosyl hydrolase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016858 [exp] 196 / 6e-60 AT5G49360 922 / 0.0 beta-xylosidase 1 (.1) Lus10010015 [exp] 169 / 1e-49 AT1G02640 1148 / 0.0 beta-xylosidase 2 (.1) Lus10020966 [exp] 157 / 4e-45 AT5G64570 1181 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Lus10022374 [exp] 139 / 7e-39 AT1G78060 1065 / 0.0 Glycosyl hydrolase family protein (.1) Lus10019099 [exp] 139 / 1e-38 AT1G78060 1007 / 0.0 Glycosyl hydrolase family protein (.1) Lus10004271 [exp] 123 / 4e-33 AT5G10560 989 / 0.0 Glycosyl hydrolase family protein (.1) Lus10002128 [exp] 51 / 7e-09 AT3G19620 108 / 2e-38 Glycosyl hydrolase family protein (.1) Lus10013388 [exp] 47 / 1e-06 AT5G04885 801 / 0.0 Glycosyl hydrolase family protein (.1) Lus10008434 [exp] 46 / 2e-06 AT5G04885 796 / 0.0 Glycosyl hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G141400 [exp] 180 / 1e-53 AT5G49360 1113 / 0.0 beta-xylosidase 1 (.1) Potri.008G108100 [exp] 179 / 2e-53 AT5G49360 1104 / 0.0 beta-xylosidase 1 (.1) Potri.002G197200 [exp] 178 / 5e-53 AT1G02640 1189 / 0.0 beta-xylosidase 2 (.1) Potri.014G122200 [exp] 178 / 7e-53 AT1G02640 1154 / 0.0 beta-xylosidase 2 (.1) Potri.001G206800 [exp] 160 / 3e-46 AT5G64570 1168 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Potri.003G022900 [exp] 159 / 8e-46 AT5G64570 1138 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Potri.001G294700 [exp] 154 / 3e-44 AT3G19620 1080 / 0.0 Glycosyl hydrolase family protein (.1) Potri.001G354250 [exp] 137 / 1e-40 AT3G19620 303 / 1e-97 Glycosyl hydrolase family protein (.1) Potri.007G114300 [exp] 143 / 2e-40 AT3G19620 776 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G168400 [exp] 139 / 5e-39 AT1G78060 981 / 0.0 Glycosyl hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00933 [flax] [poplar] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain
Representative CDS sequence Show only first row Show all	>Lus10037728 pacid=23167170 polypeptide=Lus10037728 locus=Lus10037728.g ID=Lus10037728.BGIv1.0 annot-version=v1.0 ATGGCTCACACCAAAACGACACTCCCCTTCCTCTTCCTATTCTTCTTCCTCCTCATTCATTCATCGCAGTCGAGGGTGCCCTTCGCCTGCGACCCTCGCA GCCCCGGAACCCGGAGCCTGAAGTTCTGCAGGGTCCGGGTGCCTTTGCACGTCAGGGTGGTGTCGGACGAAGCGAGGGCGATGTACAACGGAGGGGCGGC GGGGCTGACATTTTGGAGTCCGAACGTGAACATATTCAGGGACCCACGGTGGGGGAGAGGCCAAGAGACTCCCGGAGAGGACCCATACCTTGCCGGAAAG TACGCAGCCAGTTACGTCAAAGGACTGCAGAGTGTGTCAGGGAACAGGCTCAAAGTGGCGGCCTGCTGCAAGCACTACACCGCTTACGATCTCGATAACT GGAACGGCGTGGATCGTTACCATTTCAAAATAATTCTTTTTTATTTTTAG
AA sequence Show only first row Show all	>Lus10037728 pacid=23167170 polypeptide=Lus10037728 locus=Lus10037728.g ID=Lus10037728.BGIv1.0 annot-version=v1.0 MAHTKTTLPFLFLFFFLLIHSSQSRVPFACDPRSPGTRSLKFCRVRVPLHVRVVSDEARAMYNGGAAGLTFWSPNVNIFRDPRWGRGQETPGEDPYLAGK YAASYVKGLQSVSGNRLKVAACCKHYTAYDLDNWNGVDRYHFKIILFYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49360		ATBXL1, BXL1	beta-xylosidase 1 (.1)		Lus10037728 [exp]	0	1
AT5G49350			Glycine-rich protein family (....		Lus10037727 [exp]	1.0	0.9454
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10028217 [exp]	3.5	0.8483
AT3G49700		AtACS9, ACS9, E...	ETHYLENE OVERPRODUCING 3, 1-am...		Lus10007714 [exp]	6.3	0.8125
					Lus10008327 [exp]	6.9	0.8179
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Lus10008762 [exp]	8.0	0.8179
					Lus10039495 [exp]	8.7	0.7774
					Lus10010697 [exp]	8.9	0.8179
AT1G31930		XLG3	extra-large GTP-binding protei...		Lus10024210 [exp]	9.4	0.7796
AT1G49475	B3		AP2/B3-like transcriptional fa...		Lus10007192 [exp]	9.7	0.7605
					Lus10014099 [exp]	9.8	0.7796

Compare expression of checked genes

Lus10037728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.