Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 748 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 712 / 0 ARK3 receptor kinase 3 (.1) AT4G27300 692 / 0 S-locus lectin protein kinase family protein (.1) AT1G65800 679 / 0 ARK2 receptor kinase 2 (.1) AT1G65790 673 / 0 ARK1 receptor kinase 1 (.1) AT1G11340 649 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 624 / 0 S-locus lectin protein kinase family protein (.1) AT1G11300 621 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G61370 607 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 605 / 0 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016871 [exp] 1313 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016860 [exp] 1307 / 0 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10037732 [exp] 1282 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10016862 [exp] 1159 / 0 AT4G27290 702 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016859 [exp] 1070 / 0 AT4G27290 626 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037731 [exp] 997 / 0 AT4G27290 644 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 783 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 779 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033365 [exp] 778 / 0 AT4G21380 810 / 0.0 receptor kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G411000 [exp] 986 / 0 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411100 [exp] 975 / 0 AT4G27290 746 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411300 [exp] 966 / 0 AT4G27290 759 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G418100 [exp] 958 / 0 AT4G27290 778 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411400 [exp] 955 / 0 AT4G27290 770 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G410800 [exp] 955 / 0 AT4G27290 758 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 848 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412300 [exp] 822 / 0 AT4G27290 886 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 816 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G126151 [exp] 808 / 0 AT4G27290 868 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF11883 [flax] [poplar] DUF3403 Domain of unknown function (DUF3403) CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10037729 pacid=23167054 polypeptide=Lus10037729 locus=Lus10037729.g ID=Lus10037729.BGIv1.0 annot-version=v1.0 ATGGAGTCGTTGATGTTGTTTCTTCCTGTTGCTTGTTTTCTCTTCTTACCCTCTTCTTCGTCTGCACTTACAGCTGTCACTCCAACCCAACCACTCATTG ACAACAACGATGCACAAACCTTACAATCCAGAGACGGGACATTCGAGCTCGGTTTCTTCACTCCTCCAGGCGCACCTTCCAAGAACCGTTACTTGGGAAT TTGGTACAGAAACATAGCTGTTAGAAAATTCGTTTGGGTTGCCAATCGAGAAGATCCATCCACAGACAACGGCAGCTCTTTGATCATTGACGCTTCCAAG AACAACACCCTAGCACTCGTCACCAAAGACAACAATACTGTTCTTTGGTCTACTTCAGCAAACCGTGATGAAGATTTCTCGTCCGCCACGGATCCAGTAG CCGAGCTTCTGGAGACGGGGAATCTAGTACTAAGAGATCGAAACGATGAAAATCGCAATAACTACTTTTGGCAGAGCTTTGATCACCCATGTGACACGAT GTTACAAGGGATGAAGATTGGCTGGGATTCCAAAACGAGACTTAACCGTCAACTAACGGCGTGGAAAAGTCCTGACGATCCATTCCCTGGAGACTTCACT TTTGGTTACCAAATGCAGAACAACCCTGAGGCATTTATGCGGAAGGGTTTGGAAAAGTTGTACAGAGGTGGACCATGGAACGGCTTAGGGTTTGGAGGCG CCCCTGAATTGAAAAACAACCCTATCTTCTCATACACGTTTGTTTGGGATGAAGATGATGCTTACTTCACATACGAGCTAAAGAACAAGTCTTTGGTGTC CATACTAGTCCTGAATCAGACAACTTATACTCGGCAAGCCTGGGCTTGGAATGAAGTATCTCAGAGTTGGGGGATGTATTCTTCAGTGCCGAGGGATCAG TGCGACAGCTACGCTGTATGTGGCGTGTATGCCAGCTGCGCAGTGTCTAACGCCCCAATTTGTCAGTGCTTGAAAGGGTTCAAGCCTAAGTCGCAGGAGA TGTGGGATGTGTTGGACTGGTCACGTGGTTGCGTGAGGGATAAGCCGTTAGACTGCTCGGAAGGGAGGAGTGGAGATGGGTTTGTAAAGTATAGTGGGTT GAAATTGCCTGATGCTACGAATTCATGGGTGAACAAGAGTATGACTCTGGAGGAATGCAGGGTCAAGTGTTTGATGAATTGTTCTTGTATGGCGTATACT AGTACAGACGTCAGAGGGGCAGGGAGTGGATGCTCCGTTTGGTATGGTGATCTGAACGATATGAAACAGTTTCCAGGAGGGGGGCAAGATATGTACATCC GAATGCCTGCTTCCGAAATCGATATAAAGACCAAGAATAAGGTGAAACCCAGGGTAGGTGCCATTGTTGGAGCTGTAGTTGGCAGTCTGTTAGGGTTGCT TGCTATTGCCTATTTCATTCCCAAGATGAAATCAAAGTGCAAAGACAGACGAAGTGGCAGCAGCAAGATGTCTGCAAAACTTGGCAGAGATGAAGAAACA GAGCTACCATTATTTGAACTAGCTACAATAGTTGATGCCACTAACAACTTTTCAGTCACCAACAAGTTAGGTGAAGGAGGATTTGGTCCTGTATACAGGG GTGTTATGGCAGATGGACAAGAAATTGCAGTGAAGAGGCTATCAAGCAGTTCGGGGCAAGGAACGAAGGAGTTCAAGAATGAAGTACTACTGATATCAAA ACTTCAGCACAGGAATCTTGTCAAGCTTCTAGGGTGTTGCATACAAGGAGACGAGAAATTGCTGGTTTATGAATATATGCCTAACAAAAGTCTCGACTCC TTCATCTTTGATGACAGGAGGAGTGGATTGCTAGACTGGGGTAAGCGTTTCAACATAATTTGTGGGATAGCTAGAGGGCTAATGTACCTTCACCAGGACT CAAGATTAAGGATTGTACATAGAGATCTGAAATCAAGTAACGTTCTCCTCGATAACGAACTGAACCCAAAGATTTCGGATTTTGGCCTGGCTAAAAGTTT TGGAGGAGATAACACGGAAGGCAACACAAACAGGGTGGTCGGAACATATGGATATATGGCACCAGAATATGCGGTTGATGGGTTGTTTTCGGTGAAATCA GACGTGTTTAGCTTTGGAATTGTTGTATTAGAAATTATAAGCCGGAAGAAAAGTCGAGGTTTCTACCATGTTGACCAGAGTTTGAACCTTATCGGATATG CTTGGAAATTGTGGAAGGAAGGAAAGGCGATAGAAATAATGGATTCCGCATTAGAAAAGGAGTCCTATAAAAATGTGTCACAAGTGATGAGATGCATCCA AATAGGTTTATTATGTGTTCAAAATTGTGCAGAAGACAGGCCTGCCATGGGTAATGTGGTTGTGATGTTGGAAGGAGGAGAAGAGACTGTTGCACTATTA CCTTCACCAAAAGAGCCTGGATTCTTTAACGATAAAGATTTTTTCCGTGTGATAGATTCATCATCAAACATCTTTCCATCATCTTCTACTAATGAAATGA GTTTCACAGTGCTAGAAGCTCGTTGA
AA sequence Show only first row Show all	>Lus10037729 pacid=23167054 polypeptide=Lus10037729 locus=Lus10037729.g ID=Lus10037729.BGIv1.0 annot-version=v1.0 MESLMLFLPVACFLFLPSSSSALTAVTPTQPLIDNNDAQTLQSRDGTFELGFFTPPGAPSKNRYLGIWYRNIAVRKFVWVANREDPSTDNGSSLIIDASK NNTLALVTKDNNTVLWSTSANRDEDFSSATDPVAELLETGNLVLRDRNDENRNNYFWQSFDHPCDTMLQGMKIGWDSKTRLNRQLTAWKSPDDPFPGDFT FGYQMQNNPEAFMRKGLEKLYRGGPWNGLGFGGAPELKNNPIFSYTFVWDEDDAYFTYELKNKSLVSILVLNQTTYTRQAWAWNEVSQSWGMYSSVPRDQ CDSYAVCGVYASCAVSNAPICQCLKGFKPKSQEMWDVLDWSRGCVRDKPLDCSEGRSGDGFVKYSGLKLPDATNSWVNKSMTLEECRVKCLMNCSCMAYT STDVRGAGSGCSVWYGDLNDMKQFPGGGQDMYIRMPASEIDIKTKNKVKPRVGAIVGAVVGSLLGLLAIAYFIPKMKSKCKDRRSGSSKMSAKLGRDEET ELPLFELATIVDATNNFSVTNKLGEGGFGPVYRGVMADGQEIAVKRLSSSSGQGTKEFKNEVLLISKLQHRNLVKLLGCCIQGDEKLLVYEYMPNKSLDS FIFDDRRSGLLDWGKRFNIICGIARGLMYLHQDSRLRIVHRDLKSSNVLLDNELNPKISDFGLAKSFGGDNTEGNTNRVVGTYGYMAPEYAVDGLFSVKS DVFSFGIVVLEIISRKKSRGFYHVDQSLNLIGYAWKLWKEGKAIEIMDSALEKESYKNVSQVMRCIQIGLLCVQNCAEDRPAMGNVVVMLEGGEETVALL PSPKEPGFFNDKDFFRVIDSSSNIFPSSSTNEMSFTVLEAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27290			S-locus lectin protein kinase ...		Lus10037729 [exp]	0	1
AT5G65030			unknown protein		Lus10014339 [exp]	3.7	0.9300
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040764 [exp]	11.0	0.9283
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020360 [exp]	11.8	0.9244
AT5G46550			DNA-binding bromodomain-contai...		Lus10002784 [exp]	12.7	0.9223
AT5G37450			Leucine-rich repeat protein ki...		Lus10002278 [exp]	12.7	0.9121
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10022591 [exp]	12.8	0.9269
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030901 [exp]	17.9	0.9213
AT1G68940			Armadillo/beta-catenin-like re...		Lus10013050 [exp]	20.6	0.9212
					Lus10033269 [exp]	21.6	0.9238
AT4G18360			Aldolase-type TIM barrel famil...		Lus10038507 [exp]	24.6	0.9196

Compare expression of checked genes

Lus10037729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.