Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 617 / 0 S-locus lectin protein kinase family protein (.1) AT4G27300 578 / 0 S-locus lectin protein kinase family protein (.1) AT1G61380 470 / 9e-157 SD1-29 S-domain-1 29 (.1) AT1G61440 459 / 2e-152 S-locus lectin protein kinase family protein (.1) AT1G61490 453 / 4e-150 S-locus lectin protein kinase family protein (.1) AT1G61400 447 / 8e-148 S-locus lectin protein kinase family protein (.1) AT1G11330 446 / 5e-147 S-locus lectin protein kinase family protein (.1.2) AT1G11300 455 / 1e-143 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G11280 425 / 4e-139 S-locus lectin protein kinase family protein (.1.2.3.4) AT4G23180 371 / 4e-120 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016871 [exp] 997 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 996 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10016860 [exp] 986 / 0 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10016862 [exp] 971 / 0 AT4G27290 702 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037729 [exp] 962 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016859 [exp] 732 / 0 AT4G27290 626 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016876 [exp] 613 / 0 AT4G27300 462 / 5e-156 S-locus lectin protein kinase family protein (.1) Lus10038554 [exp] 580 / 0 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007611 [exp] 509 / 3e-171 AT1G11340 751 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G418100 [exp] 766 / 0 AT4G27290 778 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411100 [exp] 766 / 0 AT4G27290 746 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411000 [exp] 765 / 0 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411300 [exp] 761 / 0 AT4G27290 759 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411400 [exp] 751 / 0 AT4G27290 770 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 653 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414077 [exp] 649 / 0 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411700 [exp] 619 / 0 AT4G27290 800 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414000 [exp] 607 / 0 AT4G27290 766 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125401 [exp] 603 / 0 AT4G27290 824 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF11883 [flax] [poplar] DUF3403 Domain of unknown function (DUF3403) CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Lus10037731 pacid=23167250 polypeptide=Lus10037731 locus=Lus10037731.g ID=Lus10037731.BGIv1.0 annot-version=v1.0 ATGAAGGTTGGATGGGATTCCAAGACGGGGCTCAACCGTCGGATAACAGCGTGGAAAAGCCCCGAGGATCCATCCCCTGGAGATTTCACTTGGGGGTACC AAATTCATCAAGAAAACCCTGAGGCATTTATCTGGAAGGGATGGAACAAGTTCTACAGAGCTGGACCCTGGAATGGCGTACGGTTTAGTGGTGGCCCTGA ATTGAGGGAAAATCCTGTTTTCTCATACACATTTGTTTGGGATGAACACAATGTTACTACAAATTTCGAGCTGAAGGACAAGTCCTTGATCTCGATAGTA GTCATGAACCAGACAACGGATATACGACAACGTCTTACTTGGAATGAAGTCTCTCAGAGTTGGGGGACGTATGCTTCGGTGCCAAGGGATCGATGCGACA ACTATGCGATATGTGGTGTCTATGCAACCTGCGTAATCTCCGAGTCCCCAATTTGCCGATGCTTGAAAGGGTTCAAGCCTAAGTCGCAGGAGATGTGGGA TATGATGGACTGGTCAGATGGGTGTGTTAGAGATAAGCCATTAGAGTGTTCGGAAGGGAGTAGTGGAGATGGGTTTATCAAGTATAGTGGGTTAAAATTA CCTGATGTCACAAATTCATGGGTGAACAAGAGTATGAGTCTGGTGGAATGCAGGGAGAAGTGTTTAATGAATTGTTCGTGTATGGCGTATACTAATACCG ACATTCGAGGAGCAGGAAGTGGCTGCTCCATTTGGCATGGTGATCTCACCGACATGAAACAGTTTACAGACACGGGACAAGAGATATACATTCGAATGCC TGCTTCCGAAATCGAGAGCAAGAGTAAGGTGAAAACAAGGGTAGGTGCTATTGTTGGAGGTGTGATTGTCGATGCCACTGACAACTTCTCATCCACCAAC AAGTTAGGGGAAGGAGGATATGGACCTGTCTACGTGGGTGTTATGGCAGATGGACAAGAGATTGCAGTGAAGAGGCTATCCAGCAGTTCAGGGCAAGGAA TGACGGAGTTCAAGAATGAAGTCGCACTGATTTCAAAACTTCAGCACAGGAATCTTGTTAAGATTTTAGGGTGTTGCATACAAGGAGACGAGAAAATGCT GGTTTATGAATACATGCCGAATAAAGGCCTGGACTCCTTTATTTTTGATGACAAGAGGAGTGGTTTTCTAGACTGGGCCAAGCGTTTCAATATAATCCGT GGGATAGCTAGAGGGTTATTGTATCTTCACCAGGATTCAAGATTGAGGATCATACATAGAGATATGAAAGCAAGTAACGTACTCCTCGATAATGAACTGA ACCCAAAGATCTCGGATTTCGGCATGGCTAGAAGTTTTGGAGGAGATAACACTGAAGGCAATACAAACAGAGTTGTCGGAACATACGGATATATGGCACC AGAATATGCAGCTGATGGGTTGTTCTCAATCAAATCAGATGTTTTCAGTTTCGGAATTCTTGTGCTAGAGATTATAAGTCGGAAAAAGAATCGAGGTTTC TATCATACAGACCAGAGCATGAACCTTATTGGATATGCCTGGAAAATGTGGAAAGAAGGAAAGGCATTAGAAATCATGGATTCCGTATTAGAAGAAGAGG CTTGTGAAAATGTCTCACAAGTGATGAGATGCATTCATATAGGTTTATTATGTGTTCAAAATCGTATTGAGCACAGACCCACCATGGGAAATGTTGTGTC AATGTTGGGAGGAGGAGAAGAGACTGCTGCTTTATTGCCGCCACCAAAAGAACCTGGATTCTTCAATGTTAAAGATTCCCTTCATACCACAGAATCATCC TCAAATACCTTTCAGCTTTCGTCTACTAACGAAATGAATTTTACGGTGCTAGAAGCTCGCTGA
AA sequence Show only first row Show all	>Lus10037731 pacid=23167250 polypeptide=Lus10037731 locus=Lus10037731.g ID=Lus10037731.BGIv1.0 annot-version=v1.0 MKVGWDSKTGLNRRITAWKSPEDPSPGDFTWGYQIHQENPEAFIWKGWNKFYRAGPWNGVRFSGGPELRENPVFSYTFVWDEHNVTTNFELKDKSLISIV VMNQTTDIRQRLTWNEVSQSWGTYASVPRDRCDNYAICGVYATCVISESPICRCLKGFKPKSQEMWDMMDWSDGCVRDKPLECSEGSSGDGFIKYSGLKL PDVTNSWVNKSMSLVECREKCLMNCSCMAYTNTDIRGAGSGCSIWHGDLTDMKQFTDTGQEIYIRMPASEIESKSKVKTRVGAIVGGVIVDATDNFSSTN KLGEGGYGPVYVGVMADGQEIAVKRLSSSSGQGMTEFKNEVALISKLQHRNLVKILGCCIQGDEKMLVYEYMPNKGLDSFIFDDKRSGFLDWAKRFNIIR GIARGLLYLHQDSRLRIIHRDMKASNVLLDNELNPKISDFGMARSFGGDNTEGNTNRVVGTYGYMAPEYAADGLFSIKSDVFSFGILVLEIISRKKNRGF YHTDQSMNLIGYAWKMWKEGKALEIMDSVLEEEACENVSQVMRCIHIGLLCVQNRIEHRPTMGNVVSMLGGGEETAALLPPPKEPGFFNVKDSLHTTESS SNTFQLSSTNEMNFTVLEAR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27290			S-locus lectin protein kinase ...		Lus10037731 [exp]	0	1
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Lus10034390 [exp]	1.0	0.9826
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Lus10034391 [exp]	1.4	0.9389
AT1G61550			S-locus lectin protein kinase ...		Lus10037730 [exp]	1.7	0.9254
AT5G01750			Protein of unknown function (D...		Lus10009092 [exp]	2.8	0.8946
AT1G65810			P-loop containing nucleoside t...		Lus10037353 [exp]	4.9	0.8689
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10004214 [exp]	5.2	0.8607
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10020877 [exp]	5.9	0.8692
					Lus10012544 [exp]	7.4	0.8749
AT5G44510		TAO1	target of AVRB operation1 (.1)		Lus10001537 [exp]	8.1	0.8518
AT4G03230			S-locus lectin protein kinase ...		Lus10031591 [exp]	11.0	0.8456

Compare expression of checked genes

Lus10037731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.