Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 762 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 750 / 0 ARK3 receptor kinase 3 (.1) AT4G27300 697 / 0 S-locus lectin protein kinase family protein (.1) AT1G65800 697 / 0 ARK2 receptor kinase 2 (.1) AT1G65790 689 / 0 ARK1 receptor kinase 1 (.1) AT1G11340 661 / 0 S-locus lectin protein kinase family protein (.1) AT1G11300 646 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G11330 645 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G11410 634 / 0 S-locus lectin protein kinase family protein (.1) AT4G21390 627 / 0 B120 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016860 [exp] 1415 / 0 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10016871 [exp] 1360 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037729 [exp] 1317 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016862 [exp] 1288 / 0 AT4G27290 702 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016859 [exp] 1150 / 0 AT4G27290 626 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037731 [exp] 1045 / 0 AT4G27290 644 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 805 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 804 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033365 [exp] 799 / 0 AT4G21380 810 / 0.0 receptor kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G411000 [exp] 978 / 0 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411300 [exp] 973 / 0 AT4G27290 759 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411100 [exp] 964 / 0 AT4G27290 746 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411400 [exp] 961 / 0 AT4G27290 770 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G418100 [exp] 958 / 0 AT4G27290 778 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G410800 [exp] 955 / 0 AT4G27290 758 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 860 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412300 [exp] 837 / 0 AT4G27290 886 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G126151 [exp] 827 / 0 AT4G27290 868 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414077 [exp] 827 / 0 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF11883 [flax] [poplar] DUF3403 Domain of unknown function (DUF3403) CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10037732 pacid=23167172 polypeptide=Lus10037732 locus=Lus10037732.g ID=Lus10037732.BGIv1.0 annot-version=v1.0 ATGGAGTTGATGTCGTTTCTTCCTGTTTATTTTTTCCTCTTACCCTTTTCTTCTTTTGCACTTGAAGCTGTGACTCCAACCCAACCACTGATTGACAGCG ATGCACAGACCTTGCAGTCCAGAGATGGAACATTCGAGCTGGGTTTCTTCACTCCTCCAGGTGCGCCTTCCAAGAATCGATACTTGGGAATTTGGTACAG AAACATAGCTGATAGAAAAGTTGTTTGGGTAGCTAATCGAGAAAGTCCAGCCACCAACAACGACAGCTCTTTGATCATTGACACTGCCAAGAACAACAGC CTAGTACTTGTTGGCGGATACAATAATAATACTGTTTTGTGGTCTATTTCCGAATATGAAAGATCAAACAGGGAAAGTGATGCCTTGACGCCCAAGAATC CAGTAGCTGAGCTTCTGGAGACGGGAAATCTGGTACTAAGAGACCAAACGGATGTTGAAGGCAACTACTTGTGGCAGAGCTTTGACTACCCATGTGACAC ACTGTTACCAGGGATGAAGCATGGATGGGATTCCAAAACGGGGCTCAACCGTCGAGTAACGTCGTGGAAGAGCCCCGAGGATCCCTCTGCTGGAGACTTC ACTTGGGGCTACCAAGTTCATCAGGAAAACCCCGAGGCATTTATGTGGAAGGGTTCGGACAAGGTGTACAGAGGTGGACCCTGGAATGGCGTAGGGTTTA GTGGTAACCCTGAATTGAGGGAGAATCCAGTTTTCTCCTACAGATTTGTTTGGGATGAAGATGACGTTTACTACACATTTGAGCTGAAGAACAAGTCGTT GATCTCGATAGTAGTCATGAACCAGACATCCTATACACGACAACGCTTGACTTGGAGCGACGCCACGCAGACTTGGCGGGTGTTTACTTCGGTGCCAAGG GATGAATGCAACAAGTACAAGATCTGTGGCATGTATGCGACCTGCGCGATTTCGGAGTCCCCAATTTGCCAGTGCTTGAAAGGGTTCAAGCCTAAGTCTC AGGAGATGTGGGATGGATTGGACTGGTCACATGGATGCGTGAGAAACAAGCCATTAGAGTGCTCAGATGATGGGTTTGTGAAGTATAGTGGTTTGAAGTT ACCTGATGCTACGAATTCATGGGTGAACAAGAGTATGAGTCTGGGGGAGTGCAGGGTCAAGTGTTTGATAAATTGTTCTTGTATGGCATATGCTAGTACC GATATTCGAGGAGCTGGAAGTGGCTGCTCCCTTTGGTATGGTGATCTAACCGATATCACACAGTTTACAGACGGGGGACAAGATCTATACATTCGAATGC CTGCTTCCGAAATAGAGAGCAAGAATAAGGTGAAAACAAGGGTAGGTGCTATTGTTGGAGCTGTGGTTGGCAGTCTGTTAGGGTTGCCTGCCATTGTCTG TTTCATTCATAAGATGAAATCAAAGTGCAGACCTAGAGCCAGCAGCAAGATGAGTACTGCAACAATTGGCAGAAAAGATGAAATAGAGCTACCATTGTTT GAACTAGCTACAATAGTTGATGCCACTGACAACTTTTCATTCGCCAACAAGTTAGGGGAAGGAGGATTTGGACCTGTCTACGTGGGTGTTATGGCAGATG GACAAGAAATTGCGGTGAAGAGGCTATCAAGCAATTCAAGGCAAGGAATAGATGAGTTTAAGAATGAAGTACTACTGATTTCTAAACTTCAGCACAGGAA TCTTGTCAAGCTTCTTGGGTGCTGCATACAAGGAGACGAGAAGATGCTGGTTTATGAATACATGCCTAACAAAGGCCTCGACTCCTTCGTTTTTGATGAC AGGAGGAGTGGATTGCTAGACTGGGCCAAGCGATTCAATATAATTTGTGGGATAGCTAGAGGGTTATTGTATCTTCACCAGGACTCGAGATTGAGGATCA TACATAGAGATTTGAAAGCAAGTAACGTGCTCCTTGACAATGAACTAAACCCAAAGATATCAGATTTTGGAATGGCAAGAAGCTTTGGCGGAGATAACAC TGAAGGCAACACAAACAGAGTGGTCGGAACATATGGATACATGGCACCGGAATATGCAGCTGATGGATTATTCTCAGTCAAATCAGATGTTTTCAGTTTT GGAATTCTTGTACTAGAGATTATAAGTCGGAAAAAAAGTCGAGGTTTCTATCATACAAACCAGAATACGAATCTTATTGGATATGCCTGGAAACTATGGA AGGAAGGGGAGGCATCACAAATAATGGATTCCGTATTAGAAAAGGAGCATTCTGAAAATGTATCGCAAATAATGCGATGCATTCATATAGGTCTATTATG TGTTCAAAATCGTGCAGAGGATAGGCCCACCATGGGAAATGTTGTGTTGATGTTAGGCGGCGGAGAAGAGACTGCTGCTCTATTGCCTCTACCAAAAGAG CCTGGATTCTTCAACTCTAGAGATCTTCTTTATGGAACAGAATCGTCCTCAAGTACCTTTCAATTGTCTTCTACTAACGAAATGAGTTTCACGATGATGG AAGCTCGATGA
AA sequence Show only first row Show all	>Lus10037732 pacid=23167172 polypeptide=Lus10037732 locus=Lus10037732.g ID=Lus10037732.BGIv1.0 annot-version=v1.0 MELMSFLPVYFFLLPFSSFALEAVTPTQPLIDSDAQTLQSRDGTFELGFFTPPGAPSKNRYLGIWYRNIADRKVVWVANRESPATNNDSSLIIDTAKNNS LVLVGGYNNNTVLWSISEYERSNRESDALTPKNPVAELLETGNLVLRDQTDVEGNYLWQSFDYPCDTLLPGMKHGWDSKTGLNRRVTSWKSPEDPSAGDF TWGYQVHQENPEAFMWKGSDKVYRGGPWNGVGFSGNPELRENPVFSYRFVWDEDDVYYTFELKNKSLISIVVMNQTSYTRQRLTWSDATQTWRVFTSVPR DECNKYKICGMYATCAISESPICQCLKGFKPKSQEMWDGLDWSHGCVRNKPLECSDDGFVKYSGLKLPDATNSWVNKSMSLGECRVKCLINCSCMAYAST DIRGAGSGCSLWYGDLTDITQFTDGGQDLYIRMPASEIESKNKVKTRVGAIVGAVVGSLLGLPAIVCFIHKMKSKCRPRASSKMSTATIGRKDEIELPLF ELATIVDATDNFSFANKLGEGGFGPVYVGVMADGQEIAVKRLSSNSRQGIDEFKNEVLLISKLQHRNLVKLLGCCIQGDEKMLVYEYMPNKGLDSFVFDD RRSGLLDWAKRFNIICGIARGLLYLHQDSRLRIIHRDLKASNVLLDNELNPKISDFGMARSFGGDNTEGNTNRVVGTYGYMAPEYAADGLFSVKSDVFSF GILVLEIISRKKSRGFYHTNQNTNLIGYAWKLWKEGEASQIMDSVLEKEHSENVSQIMRCIHIGLLCVQNRAEDRPTMGNVVLMLGGGEETAALLPLPKE PGFFNSRDLLYGTESSSSTFQLSSTNEMSFTMMEAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10037732 [exp]	0	1
					Lus10012544 [exp]	4.4	0.8672
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036099 [exp]	6.6	0.8579
AT1G27170			transmembrane receptors;ATP bi...		Lus10020537 [exp]	8.5	0.7945
AT2G45910			U-box domain-containing protei...		Lus10014771 [exp]	9.2	0.8320
AT5G58260		NdhN	NADH dehydrogenase-like comple...		Lus10019123 [exp]	9.6	0.8385
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10010960 [exp]	13.6	0.8306
AT5G22390			Protein of unknown function (D...		Lus10004863 [exp]	17.9	0.8341
AT4G33490			Eukaryotic aspartyl protease f...		Lus10033503 [exp]	18.5	0.7756
AT5G44510		TAO1	target of AVRB operation1 (.1)		Lus10001537 [exp]	22.6	0.8122
AT1G27170			transmembrane receptors;ATP bi...		Lus10020524 [exp]	23.7	0.8002

Compare expression of checked genes

Lus10037732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.