Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 343 / 9e-112 S-locus lectin protein kinase family protein (.1) AT1G65800 338 / 3e-109 ARK2 receptor kinase 2 (.1) AT4G21380 331 / 2e-106 ARK3 receptor kinase 3 (.1) AT4G27300 325 / 2e-104 S-locus lectin protein kinase family protein (.1) AT1G11340 325 / 2e-103 S-locus lectin protein kinase family protein (.1) AT1G65790 319 / 8e-102 ARK1 receptor kinase 1 (.1) AT1G11330 312 / 5e-99 S-locus lectin protein kinase family protein (.1.2) AT1G61430 300 / 1e-94 S-locus lectin protein kinase family protein (.1) AT1G11410 300 / 2e-94 S-locus lectin protein kinase family protein (.1) AT1G11300 308 / 3e-94 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037729 [exp] 545 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 524 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016860 [exp] 513 / 6e-177 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10016876 [exp] 499 / 2e-176 AT4G27300 462 / 5e-156 S-locus lectin protein kinase family protein (.1) Lus10016862 [exp] 508 / 1e-175 AT4G27290 702 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 509 / 3e-175 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10016859 [exp] 431 / 7e-147 AT4G27290 626 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 394 / 8e-131 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 393 / 4e-130 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G411000 [exp] 428 / 7e-144 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411100 [exp] 424 / 1e-142 AT4G27290 746 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411300 [exp] 422 / 1e-141 AT4G27290 759 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G418100 [exp] 417 / 1e-139 AT4G27290 778 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411400 [exp] 417 / 1e-139 AT4G27290 770 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G410800 [exp] 410 / 5e-137 AT4G27290 758 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 392 / 7e-130 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125100 [exp] 387 / 4e-128 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125151 [exp] 383 / 1e-126 AT4G27290 757 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125501 [exp] 378 / 2e-126 AT4G27290 709 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Lus10037733 pacid=23167032 polypeptide=Lus10037733 locus=Lus10037733.g ID=Lus10037733.BGIv1.0 annot-version=v1.0 ATGAGTTTGGAGGAATGCAGAGGCAACTGTTTGATGAATTGTTCTTGTATGGTGTATACTAGTACCGATATTCGAGGGGCTGGAAGTGGCTGCTCTATTT GGTACGGTGATCTGAACGACATGAAACAGTTTCCAGGCAGGGGACAAGAGATATACATCCGAATGCCTGCTTCAGAAATAGATAGTTACCGTGTTTTCTT AAATCCTGACTGGGGGGTTTGTGTGACTGATGAAGAGACCAAGAATAAGGTGAGATCAAGGGTAGCTTCCATTGTTGGACCTGTGGTTGGAAGTCTGCTA GGGCTGCTTGTCATTGCCTATTTCATTCCTAAGATGAAATCAAAGTGCAAAGGCAGACGAAGAAGCAGCAGCAAGATGACTGCAAAACTCAGCAGAAATG AAGAAATAGAGCTACCATTGTTTGAACTAACTGCAATAGTTGATGCCACTGGCAACTTTGCATTTGCCAACAAGTTGGGGGAAGGAGGATATGGACCTGT CTACGTGGGTGTTATGGGAGATGGACAAGAAATTGCAGTGAAGAGGCTATCAAGCAGTTCAGGGCAAGGAATGAAGGAATTCAAGAACGAAGTACTACTG ATTTCAAAACTTCAACACAGGAATCTTGTCAAGCTTCTTGGGTGCTGCATACAGGGAGATGAAAAGATGCTGGTTTATGAATACATGCCTAACAAAGGCC TCGACTCCTTCATTTTTGATGACAAGAGGAGTGGATGCCTAGGATGGGGGAAGCGTTTCAACATAATTTGTGGGATAGCTAGAGGACTACTGTATCTTCA TCAAGACTCAAGATTGAGAATCGTTCATAGAGATCTAAAAGCAAGTAATGTACTCCTCGATAACGAACTGAATCCAAAGATCTCGGATTTTGGCATGGCT AGAAGCTTTGGAGGAGATAACACTGAAGGCAACACAAACAGAGTGGTCGGAACATATGGGTACATGGCACCAGAATATGCTGCTGACGGGTTATTCTCAG TAAAATCAGACGTTTTCAGCTTTGGAATTCTTATACTTGAAATTATAAGTCGGAAGAAAAGTCGTAGTTTTTACCATGTTGATCAGAGTTTGAACCTTAT TGGATATGTAAGTGTTTATGGCTAA
AA sequence Show only first row Show all	>Lus10037733 pacid=23167032 polypeptide=Lus10037733 locus=Lus10037733.g ID=Lus10037733.BGIv1.0 annot-version=v1.0 MSLEECRGNCLMNCSCMVYTSTDIRGAGSGCSIWYGDLNDMKQFPGRGQEIYIRMPASEIDSYRVFLNPDWGVCVTDEETKNKVRSRVASIVGPVVGSLL GLLVIAYFIPKMKSKCKGRRRSSSKMTAKLSRNEEIELPLFELTAIVDATGNFAFANKLGEGGYGPVYVGVMGDGQEIAVKRLSSSSGQGMKEFKNEVLL ISKLQHRNLVKLLGCCIQGDEKMLVYEYMPNKGLDSFIFDDKRSGCLGWGKRFNIICGIARGLLYLHQDSRLRIVHRDLKASNVLLDNELNPKISDFGMA RSFGGDNTEGNTNRVVGTYGYMAPEYAADGLFSVKSDVFSFGILILEIISRKKSRSFYHVDQSLNLIGYVSVYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10037733 [exp]	0	1
AT1G59710			Protein of unknown function (D...		Lus10013281 [exp]	1.4	0.8881
AT1G47710			Serine protease inhibitor (SER...		Lus10034362 [exp]	2.0	0.8690
AT1G14740			Protein of unknown function (D...		Lus10013248 [exp]	2.4	0.8470
AT3G60540			Preprotein translocase Sec, Se...		Lus10025029 [exp]	2.8	0.8646
AT4G36550			ARM repeat superfamily protein...		Lus10041754 [exp]	4.9	0.8422
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Lus10009958 [exp]	5.9	0.8452
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10039533 [exp]	6.0	0.8083
AT5G36930			Disease resistance protein (TI...		Lus10033825 [exp]	6.2	0.8678
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10012319 [exp]	7.4	0.8489
AT5G57580			Calmodulin-binding protein (.1...		Lus10018437 [exp]	13.3	0.8212

Compare expression of checked genes

Lus10037733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.