Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16910 877 / 0 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) AT1G20560 592 / 0 AAE1 acyl activating enzyme 1 (.1.2) AT2G17650 558 / 0 AMP-dependent synthetase and ligase family protein (.1) AT5G16370 516 / 4e-179 AAE5 acyl activating enzyme 5 (.1) AT5G16340 516 / 4e-179 AMP-dependent synthetase and ligase family protein (.1) AT1G21530 499 / 3e-172 AMP-dependent synthetase and ligase family protein (.1.2) AT1G66120 494 / 6e-170 AMP-dependent synthetase and ligase family protein (.1) AT1G21540 491 / 3e-169 AMP-dependent synthetase and ligase family protein (.1) AT1G75960 490 / 8e-169 AMP-dependent synthetase and ligase family protein (.1) AT1G65890 488 / 1e-167 AAE12 acyl activating enzyme 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016870 [exp] 1083 / 0 AT3G16910 918 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10016869 [exp] 901 / 0 AT3G16910 902 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10037734 [exp] 900 / 0 AT3G16910 897 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10016011 [exp] 592 / 0 AT1G20560 846 / 0.0 acyl activating enzyme 1 (.1.2) Lus10028375 [exp] 549 / 0 AT2G17650 793 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10007369 [exp] 528 / 0 AT1G65890 724 / 0.0 acyl activating enzyme 12 (.1) Lus10020787 [exp] 521 / 2e-180 AT1G65890 727 / 0.0 acyl activating enzyme 12 (.1) Lus10010956 [exp] 516 / 1e-178 AT1G65890 696 / 0.0 acyl activating enzyme 12 (.1) Lus10039161 [exp] 513 / 2e-177 AT5G16370 781 / 0.0 acyl activating enzyme 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G108000 [exp] 912 / 0 AT3G16910 904 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Potri.002G010600 [exp] 597 / 0 AT1G20560 823 / 0.0 acyl activating enzyme 1 (.1.2) Potri.005G250700 [exp] 590 / 0 AT1G20560 790 / 0.0 acyl activating enzyme 1 (.1.2) Potri.005G099500 [exp] 560 / 0 AT2G17650 800 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.019G067800 [exp] 542 / 0 AT5G16370 799 / 0.0 acyl activating enzyme 5 (.1) Potri.015G148500 [exp] 536 / 0 AT5G16370 760 / 0.0 acyl activating enzyme 5 (.1) Potri.013G096200 [exp] 529 / 0 AT5G16340 779 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G138350 [exp] 529 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.004G000300 [exp] 525 / 0 AT5G16340 756 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.016G034800 [exp] 524 / 0 AT1G66120 692 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10037735 pacid=23167343 polypeptide=Lus10037735 locus=Lus10037735.g ID=Lus10037735.BGIv1.0 annot-version=v1.0 ATGGCGACAGATGTCGATGATCTTCCCAAACTACCAGCTAACTACACCGCTTTGACTCCTCTTTGGTTCCTGGAGCGAGCCGCCACCGTCCACCCGACCC GCCCCGCTCTCGTCCATGGATCGCAGCGTTACACTTGGTCTCAGACTTACGCCCGCTGCCGCCGTTTGGCCTCCGCCCTTTCCCGCCACTCCATCTCCTC CGGCTCCACCGTCGCGATCATTGCACCCAACGTCCCAGCACTATACGAGGCACATTTCGGAGTTCCAATGTCAGGGGCAGTGCTGAACACGGTCAACATC CGTCTCAACGCACAGGCCATAGCTTTCCTGTTGGGTCACTCTGAATCAGCTGTTGTGATGGTTGACCAAGAGTTCTTCAGATTAGCTGAGGATGCCTTGA AGATACTGAATGAGAGCAATAAGGATTACAAACCGATTTTGATCGTGATTGGTGATCCGAGCTGTGAAGCCAAATCGTTGGAATATGCTTTGGGGAAAGG AGCTGTCGAGTATGAGAAGTTCTTGGCAGATGGTGACCCTGATTTTGCTTGGATGCCGCCGGAGGATGAGTGGCAAAGCATTGCTTTGGGGTATACTTCT GGCACCACGGCTAGCCCCAAGGGAGTTGTGCTGAGCCATCGCCGAGCTTATCTCATGTCGTTGAGTGGTGCGATGATTTGGGGGATGAATGAAGGAGCTG TATACCTTTGGACTCTGCCCATGTTCCATTGTAATGGGTGGTGTTATACATGGTCACTTGCTGCACTTTCTGGAACCAATATATGTCTTAGACAGGTATC AGCAAAGGCGGTATATTCAGCCATTGCCAAACATGGTGTGACTCACTTCTCTGCTGCACCAGTAGTACTAAACACAATTGTGAACGCACCAAAGGAAGAC ATCATCCATCCTCTACCGAGAGTTGTCCATGTCAGTACAGCCGGTGCTGCTCCGCCGCCTTCTGTACTCTTTGCCATGGCAGAAAGAGGATTCCGTGTAA CTCATACATACGGTCTCTCAGAAACCTATGGTCCTTCCACAGTCTGTGCATGGAAGCCCGAGTGGGACTCCGAACCTCCTATAAACCAAGCCCGCCTCAA TGCTCGCCAAGGTGTCCGATACATTGGTTTGGAAGGGCTAGATGTCGTTGACCCCAAAACTATGAACCCAGTTCCTGCTGATGGAAAGACAATGGGAGAG ATCGTAATGCGAGGGAACCTCGTGATGAAGGGATACTTAAAGAACCCAAAAGCCAACGAGGAAGCTTTCGCAAACGGGTGGTTCCACTCGGGGGATCTTG CTGTAAAGCATCCGGATTACTACATAGAGATCAAGGACAGGTCCAAGGACGTAATAATCTCCGGCGGGGAGAACATAAGCAGCGTGGAGGTTGAGAATGT TCTCTACACTCACCCAGCGGTGTTGGAAGTTTCGGTAGTGGCTCGAGCGGACGAGCGGTGGGGAGAGTCTCCCTGCGCTTTCGTGACGCTGAAAGGTGAG GTGGATAATTCGGATGAGAAACGGTTGGCTGAGGAGATAATGAAGTTCTGCAGGTCGAAGATGCCAGCATACTGGGTGCCGAAATCTGTGGTGTTTGGGG GTTTGCCGAAGACGGCCACTGGTAAGATTCAGAAGCATGTGCTGAGAGGTAAAGCCAAAGAGATGGGTCCTCTGAAGACGAGCAGGTTGTGA
AA sequence Show only first row Show all	>Lus10037735 pacid=23167343 polypeptide=Lus10037735 locus=Lus10037735.g ID=Lus10037735.BGIv1.0 annot-version=v1.0 MATDVDDLPKLPANYTALTPLWFLERAATVHPTRPALVHGSQRYTWSQTYARCRRLASALSRHSISSGSTVAIIAPNVPALYEAHFGVPMSGAVLNTVNI RLNAQAIAFLLGHSESAVVMVDQEFFRLAEDALKILNESNKDYKPILIVIGDPSCEAKSLEYALGKGAVEYEKFLADGDPDFAWMPPEDEWQSIALGYTS GTTASPKGVVLSHRRAYLMSLSGAMIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALSGTNICLRQVSAKAVYSAIAKHGVTHFSAAPVVLNTIVNAPKED IIHPLPRVVHVSTAGAAPPPSVLFAMAERGFRVTHTYGLSETYGPSTVCAWKPEWDSEPPINQARLNARQGVRYIGLEGLDVVDPKTMNPVPADGKTMGE IVMRGNLVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDYYIEIKDRSKDVIISGGENISSVEVENVLYTHPAVLEVSVVARADERWGESPCAFVTLKGE VDNSDEKRLAEEIMKFCRSKMPAYWVPKSVVFGGLPKTATGKIQKHVLRGKAKEMGPLKTSRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10037735 [exp]	0	1
AT2G46960		CYP709B1	"cytochrome P450, family 709, ...		Lus10026085 [exp]	2.4	0.9096
AT2G35680			Phosphotyrosine protein phosph...		Lus10040174 [exp]	3.5	0.9120
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Lus10008352 [exp]	3.7	0.8841
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10042229 [exp]	6.0	0.9047
AT1G12855			F-box family protein (.1)		Lus10042738 [exp]	6.7	0.8821
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10042086 [exp]	7.4	0.8861
AT1G22040			Galactose oxidase/kelch repeat...		Lus10020960 [exp]	7.4	0.8942
AT5G03670			unknown protein		Lus10023875 [exp]	10.2	0.8281
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022189 [exp]	12.6	0.8879
AT4G31130			Protein of unknown function (D...		Lus10026052 [exp]	14.0	0.9017

Compare expression of checked genes

Lus10037735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.