Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 185 / 6e-53 S-locus lectin protein kinase family protein (.1) AT4G21380 176 / 3e-49 ARK3 receptor kinase 3 (.1) AT3G12000 162 / 3e-46 S-locus related protein SLR1, putative (S1) (.1) AT1G65790 165 / 2e-45 ARK1 receptor kinase 1 (.1) AT1G65800 158 / 4e-43 ARK2 receptor kinase 2 (.1) AT2G19130 142 / 2e-37 S-locus lectin protein kinase family protein (.1) AT1G11300 137 / 1e-35 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G11410 134 / 7e-35 S-locus lectin protein kinase family protein (.1) AT1G61390 132 / 2e-34 S-locus lectin protein kinase family protein (.1.2) AT1G11340 130 / 2e-33 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016871 [exp] 469 / 1e-160 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016860 [exp] 407 / 2e-136 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10037732 [exp] 404 / 4e-135 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10016859 [exp] 379 / 2e-127 AT4G27290 626 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037729 [exp] 380 / 7e-126 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016862 [exp] 302 / 1e-96 AT4G27290 702 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037731 [exp] 199 / 1e-58 AT4G27290 644 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033365 [exp] 194 / 1e-55 AT4G21380 810 / 0.0 receptor kinase 3 (.1) Lus10014808 [exp] 179 / 6e-51 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G411300 [exp] 279 / 1e-87 AT4G27290 759 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G418100 [exp] 274 / 1e-85 AT4G27290 778 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411400 [exp] 273 / 2e-85 AT4G27290 770 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G410800 [exp] 268 / 2e-83 AT4G27290 758 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411000 [exp] 249 / 2e-76 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411100 [exp] 244 / 2e-74 AT4G27290 746 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G129300 [exp] 236 / 4e-72 AT4G21380 599 / 0.0 receptor kinase 3 (.1) Potri.001G412400 [exp] 209 / 1e-61 AT4G27290 871 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412300 [exp] 205 / 7e-60 AT4G27290 886 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 201 / 2e-58 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10037736 pacid=23167260 polypeptide=Lus10037736 locus=Lus10037736.g ID=Lus10037736.BGIv1.0 annot-version=v1.0 ATGGAGTCGTTGATGTTGCTTCTTCTTCTTCTCCCAGTTGTTTATTCTCTCCTCTTATTACCCTCATCTTCCGCACTTGAATCCGTCACTCCAACACAAC CACTCATTGACAACAACGATCCACAAACCATACAATCCAGAGATGGAACATTCGAGCTCGGTTTCTTCACTCCTCCAGGCGCCCCTTCCAAGAATCGTTA CTTGGGAATCTGGTACAGAAACATAGCCGTTAGAAAAATCGTCTGGGTAGCCAATCGAGAAAATCCAGCCCCTGACATCGGCTGCTCTTTGATCATCGAC GCTTCCAAGACCAACAGCCTAGCACTCGTCAGCAGTAGCAACAATAACACTGTTATTTGGTCTACTTCGGATTATAATACCTCGATATTGATCCCGAAGA ATCCGTTAGCTGAGCTTCTGGAGACGGGGAATCTGGTACTAAGAGATCAAAAGGATGAATATCGCAATAACTACTTGTGGCAGAGCTTTGACTATCCATG TGACACGCTGTTACCAGGGATGAAGCTTGGATGGGATTCCGTCTCGGGTCTCAACCGTCAACTAACGGCGTGGAAGAGTCCCGAGGATCCGTCCGCCGGA GACTTCACTTGGGGGTACCAAGTTCATCAGGACAACCCGGAGGCGTTTATGTGGAAGGGTTCGGATAAAGTGTACAGAAGTGGACCGTGGAATGGATTGG GGTTTAGTACAGCACCTGAATTGAGGGAGAGTCCCGTGTTTTCGTACAAATTCATTTGGGACGAGAAAAATGTTTACTGCGTATTCGAGCTGAAGAACGA GTCGTTGATCTCTATAATAGTCATGAACCAGACATCGTATACGAGGCAACGCTTGGCCTGGAATGAAGTCAGTAAGAGTTGGGGGGGTGTTTACTTCCGT GCCAAGGGATCGATGCGACACATACGCGATACGTGGCGTGTATGCCACCTGCGCGATTTTTGA
AA sequence Show only first row Show all	>Lus10037736 pacid=23167260 polypeptide=Lus10037736 locus=Lus10037736.g ID=Lus10037736.BGIv1.0 annot-version=v1.0 MESLMLLLLLLPVVYSLLLLPSSSALESVTPTQPLIDNNDPQTIQSRDGTFELGFFTPPGAPSKNRYLGIWYRNIAVRKIVWVANRENPAPDIGCSLIID ASKTNSLALVSSSNNNTVIWSTSDYNTSILIPKNPLAELLETGNLVLRDQKDEYRNNYLWQSFDYPCDTLLPGMKLGWDSVSGLNRQLTAWKSPEDPSAG DFTWGYQVHQDNPEAFMWKGSDKVYRSGPWNGLGFSTAPELRESPVFSYKFIWDEKNVYCVFELKNESLISIIVMNQTSYTRQRLAWNEVSKSWGGVYFR AKGSMRHIRDTWRVCHLRDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27290			S-locus lectin protein kinase ...		Lus10037736 [exp]	0	1
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10029757 [exp]	2.0	0.8555
AT3G47110			Leucine-rich repeat protein ki...		Lus10022863 [exp]	5.7	0.8409
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030893 [exp]	9.2	0.8103
AT1G77170			Tetratricopeptide repeat (TPR)...		Lus10020657 [exp]	17.2	0.8274
AT2G33580			Protein kinase superfamily pro...		Lus10042225 [exp]	17.9	0.7898
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10034194 [exp]	22.6	0.7810
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10003468 [exp]	22.6	0.8283
AT1G26560		BGLU40	beta glucosidase 40 (.1)		Lus10036885 [exp]	28.3	0.7930
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Lus10029000 [exp]	31.4	0.8087
AT4G22780		ACR7	ACT domain repeat 7 (.1)		Lus10006662 [exp]	32.7	0.8039

Compare expression of checked genes

Lus10037736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.