Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16920 457 / 2e-162 ATCTL2 chitinase-like protein 2 (.1) AT1G05850 433 / 2e-153 CTL1, HOT2, ERH2, ELP1, POM1, ATCTL1 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) AT3G12500 172 / 3e-51 PR-3, PR3, CHI-B, B-CHI, ATHCHIB PATHOGENESIS-RELATED 3, basic chitinase (.1) AT1G02360 159 / 1e-46 Chitinase family protein (.1) AT4G01700 153 / 2e-44 Chitinase family protein (.1) AT2G43590 84 / 1e-18 Chitinase family protein (.1) AT2G43610 79 / 8e-17 Chitinase family protein (.1) AT3G54420 79 / 1e-16 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43570 79 / 1e-16 CHI "chitinase, putative", chitinase, putative (.1) AT2G43580 77 / 4e-16 Chitinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041278 [exp] 423 / 2e-149 AT1G05850 504 / 0.0 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) Lus10037430 [exp] 423 / 2e-149 AT1G05850 505 / 0.0 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) Lus10037428 [exp] 406 / 9e-143 AT1G05850 489 / 1e-175 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) Lus10016872 [exp] 393 / 2e-139 AT3G16920 354 / 5e-124 chitinase-like protein 2 (.1) Lus10041830 [exp] 172 / 4e-51 AT3G12500 402 / 4e-141 PATHOGENESIS-RELATED 3, basic chitinase (.1) Lus10028377 [exp] 169 / 4e-50 AT3G12500 393 / 1e-137 PATHOGENESIS-RELATED 3, basic chitinase (.1) Lus10009968 [exp] 162 / 6e-48 AT1G02360 409 / 1e-145 Chitinase family protein (.1) Lus10038026 [exp] 156 / 2e-45 AT1G02360 412 / 9e-147 Chitinase family protein (.1) Lus10041282 [exp] 149 / 2e-44 AT1G05850 192 / 2e-62 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G141600 [exp] 478 / 4e-171 AT3G16920 458 / 4e-163 chitinase-like protein 2 (.1) Potri.014G146600 [exp] 394 / 3e-138 AT3G16920 456 / 2e-162 chitinase-like protein 2 (.1) Potri.009G141800 [exp] 171 / 8e-51 AT3G12500 351 / 9e-121 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.004G182000 [exp] 171 / 2e-50 AT3G12500 460 / 5e-164 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142300 [exp] 170 / 3e-50 AT3G12500 340 / 1e-116 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.014G111800 [exp] 165 / 7e-49 AT4G01700 422 / 1e-150 Chitinase family protein (.1) Potri.009G141700 [exp] 164 / 5e-48 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.002G186500 [exp] 159 / 8e-47 AT1G02360 413 / 2e-147 Chitinase family protein (.1) Potri.009G142150 [exp] 157 / 2e-46 AT3G12500 365 / 8e-128 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142000 [exp] 158 / 7e-46 AT3G12500 346 / 6e-119 PATHOGENESIS-RELATED 3, basic chitinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [flax] [poplar] Lysozyme PF00182 [flax] [poplar] Glyco_hydro_19 Chitinase class I
Representative CDS sequence Show only first row Show all	>Lus10037737 pacid=23167037 polypeptide=Lus10037737 locus=Lus10037737.g ID=Lus10037737.BGIv1.0 annot-version=v1.0 ATGGACGTCACACCAACCAAGTGGCTAGCGCTCTCAGCGATCCTACTGCTAGCCGCGTGTTCCGCAGCAGCAGCCGAGGACGAATCGGCATCGTCTTCGA AGCCGCCGACAACGCCGCCGCTGGCGGTGAAAGTGGTGAAGGGGAAGAAGCTGTGCGACAAAGGGTGGGAATGCAAAGGGCTCTCGGCCTATTGCTGTAA CCAAACGATTACGGATTTCTTCCAGACGTACCAGTTCGAGAACTTGTTCTCCAAGAGGAACACCCCAGTGGCTCACGCCGCCGGGTTCTGGGACTACCAC TCCTTCATCACCGCCGCCGCCGTCTACCAGCCGGTCGGGTTCGGGACCAGCGGCGGGAAGAACATGGGCCAGAAGGAGCTCGCTGCTTTCCTCGGCCATG TCGGCAGCAAAACTTCATGCGGGTATGGAGTTGCAACAGGAGGACCGTTAGCTTGGGGATTGTGCTACAACAAAGAGCTAAGCCCAGACAAAGTGTACTG CGACGACTACTACAAGTATGACTATCCTTGCACCCCTGGTGCTTCCTACCATGGCCGTGGTGCTCTGCCTCTTTACTGGAACTACAACTATGGGAAAACA GGGGAAGCCCTGAAAGTGGACCTACTGAACCATCCCGAGTACATAGAGAACAACGCCACCTTAGCATTCCAAGCAGCGATGTGGAAGTGGATGACCCCAG ACAAGAAGAACAAGATCCCCTCAGCACACGACGTCTTCGTCGGAAACTGGAAGCCCACCAAGAACGACACGCTGGCGAAAAGGGTGCCCGGGTTCGGAGC CACCATGAACGTCCTCCATGGAGAGCAAATGTGCGGCAAGGGGGACGACGACGCCATGAACAACGTGGTGTCTCATTACTTGTACTACCTTGACTTGATG GGCGTTGGGAGGGAGGAAGCTGGGCCTCATGAAGTTCTTACCTGTGGTGAACAGTTGCCCTTTGGCAAAGCTCCTACTGCTACTTCTTCTTGA
AA sequence Show only first row Show all	>Lus10037737 pacid=23167037 polypeptide=Lus10037737 locus=Lus10037737.g ID=Lus10037737.BGIv1.0 annot-version=v1.0 MDVTPTKWLALSAILLLAACSAAAAEDESASSSKPPTTPPLAVKVVKGKKLCDKGWECKGLSAYCCNQTITDFFQTYQFENLFSKRNTPVAHAAGFWDYH SFITAAAVYQPVGFGTSGGKNMGQKELAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKELSPDKVYCDDYYKYDYPCTPGASYHGRGALPLYWNYNYGKT GEALKVDLLNHPEYIENNATLAFQAAMWKWMTPDKKNKIPSAHDVFVGNWKPTKNDTLAKRVPGFGATMNVLHGEQMCGKGDDDAMNNVVSHYLYYLDLM GVGREEAGPHEVLTCGEQLPFGKAPTATSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10037737 [exp]	0	1
AT1G08290	C2H2ZnF	WIP3	WIP domain protein 3 (.1)		Lus10004887 [exp]	1.4	0.9791
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10031721 [exp]	3.0	0.9799
AT1G72620			alpha/beta-Hydrolases superfam...		Lus10019631 [exp]	3.9	0.9753
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10030396 [exp]	4.2	0.9785
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Lus10032226 [exp]	4.5	0.9775
					Lus10017305 [exp]	6.0	0.9732
AT1G24030			Protein kinase superfamily pro...		Lus10010703 [exp]	7.3	0.9675
AT5G66120			3-dehydroquinate synthase, put...		Lus10041882 [exp]	7.5	0.9690
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10016872 [exp]	7.7	0.9701
AT4G14740			Plant protein of unknown funct...		Lus10041187 [exp]	7.9	0.9469

Compare expression of checked genes

Lus10037737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.