Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16150 978 / 0 CAMTA calmodulin binding;transcription regulators (.1) AT3G16940 911 / 0 CAMTA calmodulin binding;transcription regulators (.1) AT5G09410 405 / 5e-126 CAMTA CAMTA1, EICBP.B calmodulin-binding transcription activator 1, ethylene induced calmodulin binding protein (.1.2.3) AT2G22300 290 / 2e-83 CAMTA SR1, CAMTA3 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) AT5G64220 263 / 5e-74 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) AT1G67310 235 / 2e-64 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) AT5G14230 48 / 3e-05 unknown protein AT2G14255 48 / 4e-05 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT1G17480 46 / 7e-05 IQD7 IQ-domain 7 (.1) AT2G03430 44 / 0.0002 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016873 [exp] 1606 / 0 AT3G16940 929 / 0.0 calmodulin binding;transcription regulators (.1) Lus10036455 [exp] 1153 / 0 AT4G16150 845 / 0.0 calmodulin binding;transcription regulators (.1) Lus10041126 [exp] 659 / 0 AT4G16150 430 / 1e-137 calmodulin binding;transcription regulators (.1) Lus10041704 [exp] 449 / 7e-143 AT2G22300 912 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Lus10024044 [exp] 299 / 6e-87 AT2G22300 822 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Lus10003405 [exp] 287 / 7e-82 AT5G64220 1028 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10036162 [exp] 288 / 2e-81 AT5G64220 818 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10011352 [exp] 277 / 1e-78 AT1G67310 637 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Lus10003119 [exp] 273 / 6e-78 AT1G67310 640 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G141700 [exp] 1125 / 0 AT4G16150 1038 / 0.0 calmodulin binding;transcription regulators (.1) Potri.008G107900 [exp] 1118 / 0 AT4G16150 1026 / 0.0 calmodulin binding;transcription regulators (.1) Potri.005G075100 [exp] 304 / 6e-88 AT2G22300 976 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.007G093400 [exp] 291 / 2e-83 AT2G22300 991 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.001G057800 [exp] 278 / 2e-79 AT1G67310 832 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.010G153100 [exp] 263 / 7e-74 AT5G64220 676 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Potri.003G170600 [exp] 237 / 4e-65 AT1G67310 856 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.008G099733 [exp] 78 / 1e-17 AT5G64220 97 / 1e-25 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Potri.004G210000 [exp] 50 / 5e-06 AT2G17390 418 / 1e-146 ankyrin repeat-containing 2B (.1) Potri.004G210100 [exp] 50 / 6e-06 AT2G17390 430 / 3e-151 ankyrin repeat-containing 2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif CL0159 [flax] [poplar] E-set PF01833 [flax] [poplar] TIG IPT/TIG domain CL0159 [flax] [poplar] PF03859 [flax] [poplar] CG-1 CG-1 domain
Representative CDS sequence Show only first row Show all	>Lus10037738 pacid=23167043 polypeptide=Lus10037738 locus=Lus10037738.g ID=Lus10037738.BGIv1.0 annot-version=v1.0 ATGGCTAGTTTAGTGGCGACGGATGTCCCGGCGCGGTTAGTCGGGTCGGAGATTCACGGGTTCCACACTCTTCAAGATTTGGATATTCGGAACATATTGG ACGAAGCAAGATCACGGTGGCTTCGTCCCAATGAAATTCACGCCATCTTATGCAACCACAAGTATTTCACCATATTTGTGAAGCCTTTGAACTTGCCCAA GAGTGGCACCATTGTCTTGTTTGACCGTAAGATGCTTAGGAACTTCAGAAAAGATGGTCATAACTGGAAGAAGAAAAAAGATGGGAAGACTATTAAAGAA GCTCACGAACATTTAAAAGTTGGTACTGAAGAAAGAATTCACGTATACTATGCACATGGCCAAGATAATCAGACTTTCGTCCGCCGATGTTATTGGCTGC TAGATAAGGCTCTAGAACACATTGTCCTTGTTCACTATCGAGAGACACAGGAGTTGCAGAGCTCTCCTGTCACGCCTCCGAATTCAAATACACGCTCAGT ATCTGACCCGTCTACTCCTTGGCCCTCAGCAGAAGAATTTGATTCTGGAGCTGATAATGCATATCCTGCAGGAGATAAAGAATTTATAGATCCTGGTCTG TTCCCTGTGAAAGATCATCAGTTGAGGCTCCATGAGATTAACACACTCGAATGGGATGACCTCGTGGCAGGTGATCCCAACAACTTAACAACCTTCCAAG GAGATGTGAGCTCCTATCTTGTCGATCAGAATCAAATTGCTGTGAACGGGTCTTCTATTTATAATGCCCTTTCAGCCAGTAATATATCCGAGGGTGTTAC TTCTATAAATCAAATCATTGACCCATGCCTCAACAGTGGGACTACTTATAGCAGTACTGCAGATGGTACCTATAGTCAGACAGCTAATCGCCTAATAAAC TCAAACACACAAAGTATAGATCGTCAAGCAGTGGCCCATGATTCTACACTGGACTATTTGGTCGATAATGGTTTGCAAAGTCAGGATAGTTTTGGAAGGT GGATGGATGATGTAATGGCCAAATCTGCAGATTCTCTAGATGACCATCTGCTTCAGCCTCATATCTCTTCCGGCAATGGGTTATCTACCTCTCCAGCAAG TGTCCAACACCAATATTCTGCTGACCACTCATTTGTTATAACTGATGTCTCACCTTCATGGGGATTTTCAGATGAGACAACAAAGGTTCTCGTAACTGGT TATTTCCATGAGCAGTTTGTGCATCTGGGAAACTCTGATCTGGTTTGTGTTTGTGGTGATGATTTCGTTCCTACTGAGGTTGTCCAATCTGGGGTATATC GTTGTTTCTTACCGCCACATTCCCCCGGATTGGTGAATCTTTGTCTCAGTTTGGATGGCCATAAACCACTCAGCCAAGTCTTGAATTTTGAGTACCGCAG GCCTGCACAGCATGATGTTGTGGTCTCTAAAGATGAAAACTCTAAGTGGGAGCACTTCCATCTCCAGTTGCGGCTTGCTTGCCTTCTTCTATCTACATCC AAGAGCCTAAACCTGCTAAGCAGTAAAATATCCCCAAGTAACTTGAAGGATGCTAAGAAGTATGCCAGTAGAACATCCACCATTTCCGGAAATTGGTCAT TTTTATTTAAGTCTATTGAGGAGAATAGGGTTTCGCTGGCACAAGCCAAAGACGACATGTTTGAAATTACTTTGAAGAATATACTAAAAGAGTGGTTGTT GGAGAGAGTGGCTGAAGGCGGTAAAGCCACTGAATATGATACTGGAGGTCTAGGAGTAATTCACCTGTGTGCTAGACTTGGATATACTTGGGCTATCTAT TTGTATTCATGGTCAGGCTTATCCTTGGATTACCGTGACAAACATGGATGGACAGCCCTTCACTGGGCAGCATATGACGGAAGGGAGAGAATGGTGGCAG TTCTCCTATCTGCTGGAGCAAAGCCGAACTTGGTTACGGATCCAACTGCAGAGAATCCTGGTGGATGCACTCCTGGCGATCTAGCAGAAGGGAGAGGTTA TGAAGGCTTGGCAGCTTATCTATCTGAAAAGGCTCTGCTATCACATTTCAAGGATATGTCAATAGCAGGAAATGTTTGTGGCACACTACAAACAACCTCT GTGGAACCTGTAAAAGCTGAAAACCTGACCGAGGAGGAGCTATACCTTAAGGATGCGCTGGCTGCTTACCGGACAGCTGCTGATGCAGCAGGTCGGATAC AGGCAGCATTCAGAGAGCAGTCCTTAAAGTCACGGGCCAAAGCCATTGAGGTATCGAGTCCAGAGGATGAAGCAAGGAGCATAGTTGCAGCAATGAAGAT TCAACATGCATTTCGCAACTACGAGACCAAGAAAAAGATGGCTGCTGCGGTTCGCATCCAGTACAGGTTCCGCACTTGGAAAATGCGGAGAGAATTCGTC AACTTGCGCCGCCAAACCATTAGAATTCAAGCTGCATTCCGTGGGTTTCAAGTAAGGAGGCAGTACGGGAAGATTCTGTGGTCGGTTGGAGTGCTTGAGA AAGCAGTGCTGAGGTGGCGTATGAAGAGAAAGGGCCTCCGTAACCTTAAAGTAGAAGCACCCAAATCAATTCAAGAAGATGTGCAGCCAAGCGACACAGA GGAGGAATTCTTCAAAACGGGCAGGAAACATGCGGAGGAGCGTGTGGAGAGAGCTGTTGTGACAGTTCAATCCATGTTCCGATCCAAGAAGGCACAAGCT GAGTACAGAAGGATGAAACTCGCCTATAACGAAGCCTCGCTGGAATATGAAGGTCTTCTTTCACCGGACACCGATATGGGCAAATGA
AA sequence Show only first row Show all	>Lus10037738 pacid=23167043 polypeptide=Lus10037738 locus=Lus10037738.g ID=Lus10037738.BGIv1.0 annot-version=v1.0 MASLVATDVPARLVGSEIHGFHTLQDLDIRNILDEARSRWLRPNEIHAILCNHKYFTIFVKPLNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTIKE AHEHLKVGTEERIHVYYAHGQDNQTFVRRCYWLLDKALEHIVLVHYRETQELQSSPVTPPNSNTRSVSDPSTPWPSAEEFDSGADNAYPAGDKEFIDPGL FPVKDHQLRLHEINTLEWDDLVAGDPNNLTTFQGDVSSYLVDQNQIAVNGSSIYNALSASNISEGVTSINQIIDPCLNSGTTYSSTADGTYSQTANRLIN SNTQSIDRQAVAHDSTLDYLVDNGLQSQDSFGRWMDDVMAKSADSLDDHLLQPHISSGNGLSTSPASVQHQYSADHSFVITDVSPSWGFSDETTKVLVTG YFHEQFVHLGNSDLVCVCGDDFVPTEVVQSGVYRCFLPPHSPGLVNLCLSLDGHKPLSQVLNFEYRRPAQHDVVVSKDENSKWEHFHLQLRLACLLLSTS KSLNLLSSKISPSNLKDAKKYASRTSTISGNWSFLFKSIEENRVSLAQAKDDMFEITLKNILKEWLLERVAEGGKATEYDTGGLGVIHLCARLGYTWAIY LYSWSGLSLDYRDKHGWTALHWAAYDGRERMVAVLLSAGAKPNLVTDPTAENPGGCTPGDLAEGRGYEGLAAYLSEKALLSHFKDMSIAGNVCGTLQTTS VEPVKAENLTEEELYLKDALAAYRTAADAAGRIQAAFREQSLKSRAKAIEVSSPEDEARSIVAAMKIQHAFRNYETKKKMAAAVRIQYRFRTWKMRREFV NLRRQTIRIQAAFRGFQVRRQYGKILWSVGVLEKAVLRWRMKRKGLRNLKVEAPKSIQEDVQPSDTEEEFFKTGRKHAEERVERAVVTVQSMFRSKKAQA EYRRMKLAYNEASLEYEGLLSPDTDMGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10037738 [exp]	0	1
AT2G30320			Pseudouridine synthase family ...		Lus10042233 [exp]	5.3	0.6946
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10037719 [exp]	7.2	0.6930
AT5G05190			Protein of unknown function (D...		Lus10030508 [exp]	10.6	0.6520
AT2G26790			Pentatricopeptide repeat (PPR)...		Lus10005692 [exp]	12.7	0.6894
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Lus10036940 [exp]	14.0	0.6769
AT5G58520			Protein kinase superfamily pro...		Lus10031294 [exp]	23.7	0.6223
AT4G35140			Transducin/WD40 repeat-like su...		Lus10023993 [exp]	28.5	0.6647
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10035640 [exp]	29.8	0.6787
AT1G04790			RING/U-box superfamily protein...		Lus10023671 [exp]	39.5	0.6574
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10012549 [exp]	43.7	0.5761

Compare expression of checked genes

Lus10037738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.