Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02080 345 / 7e-123 ASAR1, ATSARA1C, ATSAR2 secretion-associated RAS super family 2 (.1) AT1G56330 337 / 1e-119 ATSAR1B, ATSAR1, SAR1, ATSARA1B ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS 1B, secretion-associated RAS 1B (.1) AT3G62560 332 / 6e-118 Ras-related small GTP-binding family protein (.1) AT1G09180 322 / 7e-114 ATSARA1A, ATSAR1 SECRETION-ASSOCIATED RAS 1, secretion-associated RAS super family 1 (.1) AT1G02620 187 / 2e-61 Ras-related small GTP-binding family protein (.1) AT2G24765 81 / 2e-19 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT3G49870 75 / 7e-17 ATARLA1C ADP-ribosylation factor-like A1C (.1) AT5G67560 74 / 2e-16 ATARLA1D ADP-ribosylation factor-like A1D (.1) AT2G47170 73 / 3e-16 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT3G62290 73 / 3e-16 ATARFA1E ADP-ribosylation factor A1E (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016874 [exp] 346 / 3e-123 AT4G02080 383 / 7e-138 secretion-associated RAS super family 2 (.1) Lus10036456 [exp] 342 / 1e-121 AT4G02080 386 / 3e-139 secretion-associated RAS super family 2 (.1) Lus10010926 [exp] 338 / 5e-120 AT4G02080 385 / 9e-139 secretion-associated RAS super family 2 (.1) Lus10031408 [exp] 338 / 5e-120 AT4G02080 385 / 9e-139 secretion-associated RAS super family 2 (.1) Lus10041127 [exp] 324 / 5e-114 AT4G02080 369 / 1e-131 secretion-associated RAS super family 2 (.1) Lus10031436 [exp] 73 / 3e-16 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10026383 [exp] 73 / 4e-16 AT2G18390 317 / 3e-112 TITAN 5, HALLIMASCH, ARF-LIKE 2, ADP-ribosylation factor family protein (.1) Lus10030884 [exp] 72 / 9e-16 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 72 / 2e-15 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G141900 [exp] 337 / 1e-119 AT4G02080 384 / 3e-138 secretion-associated RAS super family 2 (.1) Potri.005G019100 [exp] 335 / 3e-119 AT4G02080 357 / 1e-127 secretion-associated RAS super family 2 (.1) Potri.008G107800 [exp] 334 / 1e-118 AT4G02080 338 / 4e-120 secretion-associated RAS super family 2 (.1) Potri.013G010000 [exp] 331 / 1e-117 AT4G02080 308 / 3e-108 secretion-associated RAS super family 2 (.1) Potri.013G009900 [exp] 330 / 5e-117 AT4G02080 308 / 3e-108 secretion-associated RAS super family 2 (.1) Potri.005G015400 [exp] 323 / 2e-114 AT4G02080 299 / 7e-105 secretion-associated RAS super family 2 (.1) Potri.018G096077 [exp] 82 / 1e-19 AT2G24765 354 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.006G171500 [exp] 82 / 1e-19 AT2G24765 353 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.006G267800 [exp] 80 / 1e-18 AT2G24765 333 / 8e-119 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.018G013700 [exp] 79 / 1e-18 AT2G24765 336 / 6e-120 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00025 [flax] [poplar] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Lus10037739 pacid=23167286 polypeptide=Lus10037739 locus=Lus10037739.g ID=Lus10037739.BGIv1.0 annot-version=v1.0 ATGTTCCTATTCGACTGGTTCTATGGAATTCTCGCATCTCTTGGGCTATGGCAGAAAGAGGCCAAGATCCTCTTCTTGGGTCTCGACAATGCCGGCAAGA CCACTCTCCTTCACATGTTGAAAGACGAGAGATTAGTGCAACATCAGCCGACTCAGCATCCTACATCGGAGGAGTTGAGTATTGGCAAAATCAAGTTCAA AGCTTTTGATTTGGGCGGCCATCAGATCGCTCGCCGCGTCTGGAAAGACTATTATGCCAAGGTTGATGCCGTTGTGTACCTTGTTGATGCCTACGACAAG GAGAGGTTTGCAGAGTCGAAGAAGGAGCTGGATGCCCTCTTGTCAGACGAGGGCCTTACCAGTGTTCCATTCCTGATCCTAGGAAACAAGATCGACATTC CCTATGCAGCATCGGAAGACGAGCTCCGGTACCATCTAGGGCTGTCGAATTTCACGACCGGAAAGGGCAAGGTGAACCTCACAGACTCGAATGTCCGGCC TCTTGAGGTTTTCATGTGCAGCATTGTCCGGAAGATGGGTTACGGAGAAGGCTTCAAGTGGCTCTCTCAGTACATCAAGTAG
AA sequence Show only first row Show all	>Lus10037739 pacid=23167286 polypeptide=Lus10037739 locus=Lus10037739.g ID=Lus10037739.BGIv1.0 annot-version=v1.0 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDK ERFAESKKELDALLSDEGLTSVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10037739 [exp]	0	1
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10036456 [exp]	2.2	0.8116
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10016874 [exp]	3.9	0.7940
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10035360 [exp]	5.5	0.7729
AT2G28100		ATFUC1	alpha-L-fucosidase 1 (.1)		Lus10021427 [exp]	6.6	0.7935
AT5G39410			Saccharopine dehydrogenase (....		Lus10032995 [exp]	9.5	0.7693
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10036786 [exp]	16.0	0.7932
AT2G46170			Reticulon family protein (.1.2...		Lus10036405 [exp]	20.0	0.7953
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10016486 [exp]	25.7	0.7550
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Lus10023153 [exp]	26.7	0.6306
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10010618 [exp]	31.1	0.7477

Compare expression of checked genes

Lus10037739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.