Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16950 899 / 0 PTLPD1, LPD1 lipoamide dehydrogenase 1 (.1.2) AT4G16155 891 / 0 dihydrolipoyl dehydrogenases (.1) AT1G48030 250 / 5e-76 mtLPD1 mitochondrial lipoamide dehydrogenase 1 (.1.2) AT3G17240 239 / 8e-72 mtLPD2, LPD2 lipoamide dehydrogenase 2 (.1.2.3) AT3G54660 162 / 3e-43 ATGR2, EMB2360, GR glutathione reductase (.1) AT3G24170 133 / 3e-33 ATGR1 glutathione-disulfide reductase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016877 [exp] 1021 / 0 AT3G16950 920 / 0.0 lipoamide dehydrogenase 1 (.1.2) Lus10032649 [exp] 242 / 7e-73 AT1G48030 892 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10043103 [exp] 239 / 5e-72 AT1G48030 889 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10017102 [exp] 235 / 2e-70 AT1G48030 918 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10037825 [exp] 235 / 2e-70 AT1G48030 922 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10018770 [exp] 162 / 5e-43 AT3G54660 879 / 0.0 glutathione reductase (.1) Lus10024857 [exp] 146 / 3e-37 AT3G54660 864 / 0.0 glutathione reductase (.1) Lus10011734 [exp] 134 / 2e-33 AT3G24170 863 / 0.0 glutathione-disulfide reductase (.1.2.3) Lus10000758 [exp] 115 / 4e-27 AT3G24170 776 / 0.0 glutathione-disulfide reductase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G142100 [exp] 917 / 0 AT3G16950 895 / 0.0 lipoamide dehydrogenase 1 (.1.2) Potri.008G107600 [exp] 904 / 0 AT3G16950 877 / 0.0 lipoamide dehydrogenase 1 (.1.2) Potri.008G100800 [exp] 255 / 4e-78 AT3G17240 868 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.010G151400 [exp] 218 / 3e-64 AT3G17240 817 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.015G037800 [exp] 150 / 4e-39 AT3G54660 872 / 0.0 glutathione reductase (.1) Potri.003G178200 [exp] 143 / 1e-36 AT3G24170 848 / 0.0 glutathione-disulfide reductase (.1.2.3) Potri.001G050000 [exp] 142 / 2e-36 AT3G24170 857 / 0.0 glutathione-disulfide reductase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0608 [flax] [poplar] Reductase_C PF02852 [flax] [poplar] Pyr_redox_dim Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10037741 pacid=23167177 polypeptide=Lus10037741 locus=Lus10037741.g ID=Lus10037741.BGIv1.0 annot-version=v1.0 ATGCAGACCTCGCTCAGTCTCTCTATCTCCAACTCCGCCGCCGCCGGTCCCAGATCAACTAGCGCTTTCTTCGATTCCAATCGTTTCCCTGCTCCTCCGT CCAAGCCTGTCAATCTCCGATTCTGTGGCCTCAGGAGGGAAGCATTGGGATTCTCCAGCTCTTCTTTGACCTCCCGCCGCTCTATTGCTTCCAGGAGTGC GGCCTCGATCAACAAGGTTTGTGCCTCGCTTGCAAGTGGTAATGGCAGCACACCCAAGTCGTTTGATTACGATTTGATCATCGTAGGAGCCGGCGTTGGC GGCCACGGAGCTGCGCTTCATGCTGTCGAGAAGGGTTTAAAAACTGCAATTATTGAGGGCGACGTCGTGGGAGGAACATGCGTAAACAGAGGTTGCGTTC CGTCGAAAGCTCTCCTCGCCGTCAGTGGCCGGATGCGGGAGCTTCAGAGCGAGCATCATTTGAAAGCATTAGGCCTCCAGGTTTCAGCTGCTGGTTATGA TAGACAAGGAGTTGCTGATCATGCTAATAATCTAGCTACGAAAATTCGTAGCAATTTGACAAATTCAATGAAGGCGTTGGGTGTGGACATATTGACTGGC GTTGGCACAATCTTGGGTCCACAAAAGGTGAGAGTTGGGAAAGACAATATAGTGACTGGAAAAGACGTCATCATTGCCACCGGTTCTGTCCCATTTGTCC CAAAGGGAATCGAAGTTGATGGAAAGACCGTCATTACAAGTGATCATGCCCTCAAACTGGAGTCCGTACCTGATTGGATAGCAATCGTTGGAAGTGGTTA TATTGGTCTAGAGTTCAGTGATGTTTATACTGCACTTGGAAGCGAGGTGACATTTATTGAAGCTCTGGACCAGCTCATGCCTGGATTTGATCCTGAGATT GGGAAGTTGGCTCAAAGAGTTTTGATTAATCCTCGCAAAATTGACTACCACACTGGTGTCTTCGCAACCAAGATCACTCCAGCAAAAGATGGGAAGCCAG TTACTATAGAGCTTATTGATGCCAAAACCAAGCAGCCGAAAGACACTCTGGAGGTAGATGCAGCACTGATTGCAACCGGAAGAGCACCTTTCACAAACGG TCTTGGCTTGGAGAATATTGACGTTGCAACACAGCGTGGCTTTATTCCCGTGGATGAACGTATGCGTGTTATTGATTCTAAAGGAGACCTGGTCCCTCAC TTGTACTGTATCGGTGATGCCAACGGTAAAATGATGCTTGCCCATGCAGCCAGTGCACAAGGAATTTCAGTGGTGGAGCAACTAACTGGAAGAGACCATG TATTAAATCATTTAAGCATCCCAGCAGCTTGTTTCACTCATCCCGAAATCAGTATGGTTGGGCTGACAGAGCCTCAAGCAAGGGAAAAAGCTGAAGTAGA GGGATTTGAAGTAGCTGTTGCTAAGACAAGTTTTAAGGCAAACACAAAGGCCTTGGCCGAAAATGAAGGAGAGGGTCTGGCTAAGTTGATATATAGACCT GACAATGGGGAGATTCTCGGTGTCCACATTTTCGGGCTGCATGCTGCAGATCTCATCCACGAAGCATCTAATGCTATAGCTTTAGGGACTCGCATTCAGG AGTTGAAGTTAGCAGTTCATGCGCATCCTACGCTTTCCGAAGTCCTCGACGAACTCTTCAAGTCAGCAAAGGTTAAGGAACATGTTGGCAGCCCAGTAGG CGAGGCGGTTGCAGTCTAA
AA sequence Show only first row Show all	>Lus10037741 pacid=23167177 polypeptide=Lus10037741 locus=Lus10037741.g ID=Lus10037741.BGIv1.0 annot-version=v1.0 MQTSLSLSISNSAAAGPRSTSAFFDSNRFPAPPSKPVNLRFCGLRREALGFSSSSLTSRRSIASRSAASINKVCASLASGNGSTPKSFDYDLIIVGAGVG GHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHLKALGLQVSAAGYDRQGVADHANNLATKIRSNLTNSMKALGVDILTG VGTILGPQKVRVGKDNIVTGKDVIIATGSVPFVPKGIEVDGKTVITSDHALKLESVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEI GKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKQPKDTLEVDAALIATGRAPFTNGLGLENIDVATQRGFIPVDERMRVIDSKGDLVPH LYCIGDANGKMMLAHAASAQGISVVEQLTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEVEGFEVAVAKTSFKANTKALAENEGEGLAKLIYRP DNGEILGVHIFGLHAADLIHEASNAIALGTRIQELKLAVHAHPTLSEVLDELFKSAKVKEHVGSPVGEAVAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16950		PTLPD1, LPD1	lipoamide dehydrogenase 1 (.1....		Lus10037741 [exp]	0	1
AT5G40610			NAD-dependent glycerol-3-phosp...		Lus10022308 [exp]	1.0	0.9308
AT3G16950		PTLPD1, LPD1	lipoamide dehydrogenase 1 (.1....		Lus10016877 [exp]	2.8	0.8888
AT5G04420			Galactose oxidase/kelch repeat...		Lus10017457 [exp]	6.5	0.8491
AT1G57600			MBOAT (membrane bound O-acyl t...		Lus10013485 [exp]	7.9	0.8563
AT1G62950			leucine-rich repeat transmembr...		Lus10007019 [exp]	8.0	0.8464
AT3G19740			P-loop containing nucleoside t...		Lus10017405 [exp]	8.2	0.8554
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Lus10032251 [exp]	9.5	0.8336
AT1G45130		BGAL5	beta-galactosidase 5 (.1)		Lus10000803 [exp]	10.7	0.8229
AT3G13800			Metallo-hydrolase/oxidoreducta...		Lus10004844 [exp]	12.6	0.7539
AT1G19920		ASA1, APS2	ATP SULFURYLASE ARABIDOPSIS 1,...		Lus10033158 [exp]	13.2	0.8501

Compare expression of checked genes

Lus10037741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.