Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06670 1043 / 0 binding (.1.2) AT5G49390 239 / 5e-70 unknown protein AT5G49380 206 / 4e-61 unknown protein AT5G49370 146 / 3e-41 Pleckstrin homology (PH) domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021547 [exp] 44 / 0.0003 AT3G06670 49 / 1e-06 binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G142200 [exp] 1220 / 0 AT3G06670 1138 / 0.0 binding (.1.2) Potri.008G107300 [exp] 1219 / 0 AT3G06670 1169 / 0.0 binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04802 [flax] [poplar] SMK-1 Component of IIS longevity pathway SMK-1
Representative CDS sequence Show only first row Show all	>Lus10037742 pacid=23167211 polypeptide=Lus10037742 locus=Lus10037742.g ID=Lus10037742.BGIv1.0 annot-version=v1.0 ATGGGCGCTCCAGAGAAATCTCAACCGGGCTCCAATTCGATGCAGAGAGTTAAGGTCTATCGCCTGATTGATGGTGGTAAATGGGATGACCAAGGAACTG GGCATGTCACCGTCGACTACTTGGAGAGATCAGAAGAGCTGGGCTTGTTTGTAATTGATGAAGATGACAACGAAACACTACTCATGCACCGGATCATACC TGATGATATATACAGAAAGCAAGAAGATACAATAATCTCTTGGAGAGATCCAGAGTATTCGACTGAATTAGCTTTAAGCTTTCAAGAGCCTAACGGGTGC TCTTATATATGGGATAATATATGCAGCGTGCAACGCAGTCTGCAGTTTAACAATCTGAACGGTGAAACATTTCACAGCATGACCAGTGATCTAAGGGAAT TGCCTGTTGTCGAGCTGTCCACACTTCCTCTTATCCTCAAGACAGTTTCCGAGAGTGGCATTGCAGATCAGATGAGGCTACAAGAACTTATACTGAGTGA TCCAGAGTTTTTTCGGAAGTTGATTGATCTTTTCAGAATCTGCGAAGACTTGGAGAATAATGATGGGCTTCATATGATATTCAAAATAATGAGAGGGATC ATTTTGCTCAATAGTCCTCAAATTTTTGAAAAGATATTTGGGGATGAATACATCATGGATATCATAGGCGCCCTTGAGAATGATCCCGATGTTCCTTGTG TTCAACATCATCGCAATTTTCTGAAAGATCATGTTGTTTTTAAGGAGGCCATTCCAATAAGAGACCCCACTGTGCTGTCAAAGATACACCAGACATACCG AGTTGGTTACTTAAAGGATGTCGTTTTGGCAAGAATATTGGATGAGGGCACTGTTGCAAATCTCAATTCTATTATTCACGCAAATAATGCTAGTGTGGTT TCTTCGCTAAAGGACGATAGTGCATTTATTCAAGAATTATTTGCGAGGCTTAGGTCACCGAACACATCCGCAGAATCAAAGAAGAATCTGGTTTACTTCT TGCATGAGTTTTGCAGTTTAAGCAAGAGCCTACAGATGGTACAGCAGCTCCGGTTGTTCAGGGATCTAGTCAATGAAGGGCTCTTAGACGTCATTACAGA TGCTTTGCAAAATCAGGACAAGAAACTTGTACTGATTGGGACAGATATCCTCATTCTTTTCTTGAATCAGGATCCAAATTTGTTGCGATCTTATGTTGTC AGGCAGGAAGGGGTTACTCTGCTTGGTTTATTGGTTAAAGGAATGATAACAGACTTCGGACCAGATATGCATTGCCAATTTCTCGAAATCCTTAGGAGTT TGCTAGATTCGTACACGCTATCTGGAGCTCAGAGGGATAATATTATTGAGATTTTCTACGAAAAACATTTGGGCCGGTTAATTGATGTGATAACTGCATC ATGTCCTGCCTGTGGCACTTCTCAATCTGGCGAGGAATCTTCCAGCTCTGTTCTAGAAGTTGGGAGACAGGATGCTGTGAAGCCAGAAATACTCTCCAGC ATATGTGAACTGCTTTGTTTTTGTGTACTTCACCATCCATATAGGATAAAGTGTAACTTTCTTCTTAATAACTTTATAGATAAAGTCCTCTTTCTAACTC GGAGGAGGGAAAAATACCTCGTAGTAGCTGCTGTTCGGTTTGTTCGCACCATTCTTTCTCGGCATGATGAGCATTTGACAGCTCATTTTGTCAAGAACAA CCTTCTCAAGCCAATTGTTGATGCTTTTGTTAGCAACGGAGACCGCTATAATCTGCTGAACTCTGCAGTTTTGGAGCTTTTCGAGTATATCCGCAAGGAA AACCTAAAACTGTTGGTCAAGTACATAGTTGATTCATTCTGGGACGATTTAGGAAAATTTGAGCACTTAACTTCCATTCAGTCTCTAAAAGTTAAATATG AGCAGTATCTAGAGAATTCCGGGACAATGAACGCTGGTAGTGTGTCGGACCCAAGGAAAAGAGGTGATGAGCGTGCGCTGGAGAAAGAAGAGGAAGATTA CTTCAATGAGGACAGCGAGGAAGAGGATACTGCATCTGCATCACATACAACCAAAAAACCACCATCATTGTCCAATGGGGTTGCTTCAAGGTCTTCAAGA TATTTGATACCCGTTCCAAAGCCAAAACCTAGCAGTGGTGGACTTGTTGACTACGATGACGACGAGGATGATGCTGATTACAAACCGCCCCCACGGAAAC AAGCAGAAACTTTGGAGGAAGATGAAGGGATGATGGAGACTCTTAGGTTGAAGCGTAAATTGCCTCCTAAGGAGAGGGAGGCGGATTTATCAAAGAAGCA GCGGTCAAGTAAGAATTCAAAGGCTAGAGATGGTGTTTTTGCTGTTTTGTGCTCCACGCTGAGCCAGGCAGTGCTACCTGGCAAGAAGAGTGCTACAAGT GGGCCACGTAAATCCGCCTCCCCTACTAGGACCGACGAGCACAAAGACAATGCTGAGGAAAATCATCAACCTCGTCCCGTCTCTAAAGAATCCTCCCAGC CCGTTAGCGATAGTAACAGCAACAGCAATTTGGCAGAGGAAAAGGAAAAGGAAAAGGAAAAGGAGAAAGAGAATGAAGAAGAGAAGGAAATTACTGTTTC TCCAAAAAGCTGCTCATCTGACTGCGCGAGTAGTCCAGTGGAGAGTAAGCAGTTAAATGGAGAAGATGGTCCTTTGATACCTCCAAAATCGTCACCTGAA ATGGCCGTAAATGGATCTTGA
AA sequence Show only first row Show all	>Lus10037742 pacid=23167211 polypeptide=Lus10037742 locus=Lus10037742.g ID=Lus10037742.BGIv1.0 annot-version=v1.0 MGAPEKSQPGSNSMQRVKVYRLIDGGKWDDQGTGHVTVDYLERSEELGLFVIDEDDNETLLMHRIIPDDIYRKQEDTIISWRDPEYSTELALSFQEPNGC SYIWDNICSVQRSLQFNNLNGETFHSMTSDLRELPVVELSTLPLILKTVSESGIADQMRLQELILSDPEFFRKLIDLFRICEDLENNDGLHMIFKIMRGI ILLNSPQIFEKIFGDEYIMDIIGALENDPDVPCVQHHRNFLKDHVVFKEAIPIRDPTVLSKIHQTYRVGYLKDVVLARILDEGTVANLNSIIHANNASVV SSLKDDSAFIQELFARLRSPNTSAESKKNLVYFLHEFCSLSKSLQMVQQLRLFRDLVNEGLLDVITDALQNQDKKLVLIGTDILILFLNQDPNLLRSYVV RQEGVTLLGLLVKGMITDFGPDMHCQFLEILRSLLDSYTLSGAQRDNIIEIFYEKHLGRLIDVITASCPACGTSQSGEESSSSVLEVGRQDAVKPEILSS ICELLCFCVLHHPYRIKCNFLLNNFIDKVLFLTRRREKYLVVAAVRFVRTILSRHDEHLTAHFVKNNLLKPIVDAFVSNGDRYNLLNSAVLELFEYIRKE NLKLLVKYIVDSFWDDLGKFEHLTSIQSLKVKYEQYLENSGTMNAGSVSDPRKRGDERALEKEEEDYFNEDSEEEDTASASHTTKKPPSLSNGVASRSSR YLIPVPKPKPSSGGLVDYDDDEDDADYKPPPRKQAETLEEDEGMMETLRLKRKLPPKEREADLSKKQRSSKNSKARDGVFAVLCSTLSQAVLPGKKSATS GPRKSASPTRTDEHKDNAEENHQPRPVSKESSQPVSDSNSNSNLAEEKEKEKEKEKENEEEKEITVSPKSCSSDCASSPVESKQLNGEDGPLIPPKSSPE MAVNGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06670			binding (.1.2)		Lus10037742 [exp]	0	1
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Lus10004142 [exp]	2.0	0.8977
AT1G21610			wound-responsive family protei...		Lus10000853 [exp]	3.2	0.8715
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10037820 [exp]	3.9	0.8956
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10033321 [exp]	4.0	0.9040
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10022423 [exp]	4.9	0.8855
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10010197 [exp]	5.2	0.8852
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10034780 [exp]	6.0	0.8935
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040532 [exp]	6.2	0.8569
AT1G72390			unknown protein		Lus10008132 [exp]	6.3	0.8002
AT2G26780			ARM repeat superfamily protein...		Lus10036052 [exp]	7.0	0.8872

Compare expression of checked genes

Lus10037742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.