Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16160 171 / 4e-54 ATOEP16-2, ATOEP16-S Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1.2) AT2G28900 55 / 1e-09 OEP16, ATOEP16-L, ATOEP16-1 outer envelope protein 16, OUTER PLASTID ENVELOPE PROTEIN 16-L, outer plastid envelope protein 16-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016878 [exp] 319 / 3e-112 AT4G16160 209 / 1e-69 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1.2) Lus10016545 [exp] 53 / 9e-09 AT2G28900 185 / 4e-61 outer envelope protein 16, OUTER PLASTID ENVELOPE PROTEIN 16-L, outer plastid envelope protein 16-1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G107200 [exp] 205 / 1e-67 AT4G16160 214 / 9e-72 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1.2) Potri.010G142300 [exp] 205 / 2e-67 AT4G16160 238 / 4e-81 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1.2) Potri.001G239900 [exp] 56 / 7e-10 AT2G28900 178 / 2e-58 outer envelope protein 16, OUTER PLASTID ENVELOPE PROTEIN 16-L, outer plastid envelope protein 16-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02466 [flax] [poplar] Tim17 Tim17/Tim22/Tim23/Pmp24 family
Representative CDS sequence Show only first row Show all	>Lus10037743 pacid=23167377 polypeptide=Lus10037743 locus=Lus10037743.g ID=Lus10037743.BGIv1.0 annot-version=v1.0 ATGAACGGTGACTATAGTGACGTGAAGTCGAGATCTACAACCACGTACAGCGTCTCTGATAAAGGGAGCCCCATGTTCGACCTCGGCCACCCTCTTCTCA ACCGCATTGCCGACAGCTTCATCAAGGCCGCCGGGATTGGAATAGTTCAGGCGGTGTCTAAGGAGGCTTGTTTCACCGTCCTTGAAGGAATTAACGGTGG TAGTTCCGAAGGCCTTCCACCAGAAATCACCTCAACAGGTGCCAAGAAGCGGAATCGATTCCACGATCTCCACGGGGAAACGAACAGTAGAAGTCTTGAA GCCATTGTGAAGAACACAGGAAAGGAATCTCTACAATGGGGACTGGCTGCTGGTGTGTATTCGGGTCTCACCTATGGCTTGAAGGAAGCCCGTGGATCTC ATGACTGGAATGACATCCTTGATGTTACGTACGTACGTACATGTTGTGTTGGGCTGTTTGCAGCAAAACAGTGCGGTGGCGGGTGCTATAACTGGAGTGG CGGGGGGGGGGGGGCGGTGGCGGGTGCTATAACTGGAGTGGCGGTGGCGCTGACATCGGATGATGCTTCCCACGAGCAGATATTGCAGTGTGCTGTGACT GGAGCTGCCATTTCTACTGCTGCCAACCTTCTTTCCGGGATATTCTAA
AA sequence Show only first row Show all	>Lus10037743 pacid=23167377 polypeptide=Lus10037743 locus=Lus10037743.g ID=Lus10037743.BGIv1.0 annot-version=v1.0 MNGDYSDVKSRSTTTYSVSDKGSPMFDLGHPLLNRIADSFIKAAGIGIVQAVSKEACFTVLEGINGGSSEGLPPEITSTGAKKRNRFHDLHGETNSRSLE AIVKNTGKESLQWGLAAGVYSGLTYGLKEARGSHDWNDILDVTYVRTCCVGLFAAKQCGGGCYNWSGGGGGAVAGAITGVAVALTSDDASHEQILQCAVT GAAISTAANLLSGIF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16160		ATOEP16-2, ATOE...	Mitochondrial import inner mem...		Lus10037743 [exp]	0	1
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10042755 [exp]	6.6	0.7216
					Lus10009381 [exp]	14.5	0.7087
AT5G54740		SESA5	seed storage albumin 5 (.1)		Lus10023525 [exp]	15.0	0.7226
AT2G15220			Plant basic secretory protein ...		Lus10013868 [exp]	19.7	0.6800
AT4G35420		TKPR1, DRL1	tetraketide alpha-pyrone reduc...		Lus10006141 [exp]	32.4	0.6663
					Lus10004635 [exp]	38.5	0.6536
					Lus10040835 [exp]	38.8	0.6571
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10022720 [exp]	46.0	0.7081
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10015307 [exp]	51.3	0.7030
AT5G45840			Leucine-rich repeat protein ki...		Lus10007281 [exp]	55.4	0.6311

Compare expression of checked genes

Lus10037743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.