Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49400 161 / 2e-48 zinc knuckle (CCHC-type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037745 [exp] 262 / 3e-88 AT5G49400 172 / 6e-53 zinc knuckle (CCHC-type) family protein (.1) Lus10016879 [exp] 258 / 2e-86 AT5G49400 172 / 9e-53 zinc knuckle (CCHC-type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G142400 [exp] 215 / 9e-70 AT5G49400 151 / 1e-44 zinc knuckle (CCHC-type) family protein (.1) Potri.008G107100 [exp] 208 / 5e-67 AT5G49400 147 / 4e-43 zinc knuckle (CCHC-type) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037744 pacid=23167048 polypeptide=Lus10037744 locus=Lus10037744.g ID=Lus10037744.BGIv1.0 annot-version=v1.0 ATGTCTAGTAAGAAAGAAGAGATCAAAGCTGCGGCATTGAATGCTGCTAAGGGACTGAGTCGTGCCCAGGCTGAACGAGCGGCAACTGCTGCTGCACGCA ATGTGAATGCATATGGTCAAAAGGAAGAAGGGCCGAGTAGATGGCAGGAGAAGAGGGAAGCAAAGCGGCAGATGTATTTGATGAGTACGGAGAAGCAAGT GAGATTGGGGGAGAGAAAAGACGTCAAATCTTCCATGACTGCTGCTGGTGGCGGCACTGCTCAATGCCAGAAGTGTTTCCAAGCCGGGCACTGGACTTTT GAGTGCAAGAACGAAAGGGTTTACATGGCCAGACCCTCCCGTACCCAGCAGCTTAAGAACCCGAAGCTGAAAATGAAGGTTGCGGTGTCTTACGATCTGG AAGAACCCGAAACTCTTAACGAGGAGAAGGATAAGAAGAAGACGTCGTCTAAGAGCAAGAGGAAACATAGATCGGATTCTGGTTCAGGTAGCGACAGCGA GGCCTCCGTATTCGAGTCTGATAGCGAGTCGTCATCAGTAACAGGATCGGAATCGGAATCTTCGTCAGGGGGGAGCAGTTCAGATTACAGCTCTTCGTCT TCGGAGGAAGAAAGGAGACGGAGGAGGAAGAAGAAGAAGCAGAAGATGAAAAGTAGGCGGAGGAGATACACCTCGTCTTCCGAGTCTTCTGATTCGGACT CTGGGTCAGAGTCGGACTCTGAGAAAAAGAGCAGCCGACGGAAGAAGAGGCACAGCCGCAAGCGTTGA
AA sequence Show only first row Show all	>Lus10037744 pacid=23167048 polypeptide=Lus10037744 locus=Lus10037744.g ID=Lus10037744.BGIv1.0 annot-version=v1.0 MSSKKEEIKAAALNAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKREAKRQMYLMSTEKQVRLGERKDVKSSMTAAGGGTAQCQKCFQAGHWTF ECKNERVYMARPSRTQQLKNPKLKMKVAVSYDLEEPETLNEEKDKKKTSSKSKRKHRSDSGSGSDSEASVFESDSESSSVTGSESESSSGGSSSDYSSSS SEEERRRRRKKKKQKMKSRRRRYTSSSESSDSDSGSESDSEKKSSRRKKRHSRKR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10037744 [exp]	0	1
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10037745 [exp]	1.0	0.9940
AT5G57370			unknown protein		Lus10006974 [exp]	3.2	0.8920
AT5G47660	Trihelix		Homeodomain-like superfamily p...		Lus10039080 [exp]	4.9	0.8523
AT3G01820			P-loop containing nucleoside t...		Lus10035224 [exp]	6.0	0.8263
AT4G29270			HAD superfamily, subfamily III...		Lus10043042 [exp]	8.7	0.7800
AT1G48420		DCD, ATACD1, AC...	A. THALIANA 1-AMINOCYCLOPROPAN...		Lus10031898 [exp]	12.2	0.8086
AT1G13220		CRWN2, LINC2	LITTLE NUCLEI2, CROWDED NUCLEI...		Lus10034383 [exp]	14.5	0.8353
AT1G03910			unknown protein		Lus10027605 [exp]	19.2	0.8227
AT1G01290		CNX3	cofactor of nitrate reductase ...		Lus10033117 [exp]	19.6	0.7946
AT2G01710			Chaperone DnaJ-domain superfam...		Lus10015891 [exp]	20.8	0.8196

Compare expression of checked genes

Lus10037744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.