Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16990 275 / 1e-94 Haem oxygenase-like, multi-helical (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016885 [exp] 437 / 1e-158 AT3G16990 278 / 2e-95 Haem oxygenase-like, multi-helical (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G106600 [exp] 312 / 7e-109 AT3G16990 296 / 1e-102 Haem oxygenase-like, multi-helical (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0230 [flax] [poplar] HO PF03070 [flax] [poplar] TENA_THI-4 TENA/THI-4/PQQC family
Representative CDS sequence Show only first row Show all	>Lus10037751 pacid=23167306 polypeptide=Lus10037751 locus=Lus10037751.g ID=Lus10037751.BGIv1.0 annot-version=v1.0 ATGGCGGAATCCGGCAGATTAATAATCGATAGTTGGATCAGGAAGCATCGCATCCTCTACACGGGAGCAACCAGACAAAGTTTCACCGTCAACATACGAG ATGGCTCCATCGATCGATCCAGCTTCAAACGTTGGCTGGCGCAAGATTATGTGTTCGTGAGGCATTTTTTCACTCCGTTTGTTGCGAGTGTGCTGATCAA AGCTTCCAAGCAGTCGTCGGACAGTAACGATGTGGAAGTGGTTCTGGCTGGCATGGCGTCTCTGAGCGATGAAATCAATTGGTTCAAACAAGAGGCTTCC AAATGGGACGTTCCTCTCTCGAATCTCAATATCCACCCCGCTAACCAGAATTACTGCAGGTTTCTGGAGAAGTTAACGTCACCAGAAGTGGACTATACGG TAGCTATGACGGCGTTTTGGGCAATTGAAACGGTGTACCAGGACAGCTTTTCGTATTGTCTGGAAGATGGGAACAGGGTTCCTCCGGAGCTAAAGGGTGC TTGCCAGAGATGGGGGAATCCAGGTTTCGGCGAATACTGTCTCTCCCTCGGGGGAATTGTTGCCTGGTGCCTTGAAAAGGCGCCGAGTAATGTGGTTGCG AAGGCTGAGACCACCTTTATGGAGGTGCTGGAGCACGAGATTGAGTTCTGGAGTATGAGTAATGGTAGGGTTTAG
AA sequence Show only first row Show all	>Lus10037751 pacid=23167306 polypeptide=Lus10037751 locus=Lus10037751.g ID=Lus10037751.BGIv1.0 annot-version=v1.0 MAESGRLIIDSWIRKHRILYTGATRQSFTVNIRDGSIDRSSFKRWLAQDYVFVRHFFTPFVASVLIKASKQSSDSNDVEVVLAGMASLSDEINWFKQEAS KWDVPLSNLNIHPANQNYCRFLEKLTSPEVDYTVAMTAFWAIETVYQDSFSYCLEDGNRVPPELKGACQRWGNPGFGEYCLSLGGIVAWCLEKAPSNVVA KAETTFMEVLEHEIEFWSMSNGRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10037751 [exp]	0	1
AT5G41810			unknown protein		Lus10003901 [exp]	1.0	0.9901
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10042516 [exp]	1.7	0.9845
AT5G47720			Thiolase family protein (.1.2....		Lus10039109 [exp]	2.0	0.9845
AT3G15260			Protein phosphatase 2C family ...		Lus10005405 [exp]	2.2	0.9806
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10032006 [exp]	3.3	0.9758
AT5G44250			Protein of unknown function DU...		Lus10042660 [exp]	3.7	0.9728
AT2G24370			Protein kinase protein with ad...		Lus10021596 [exp]	4.2	0.9720
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Lus10028933 [exp]	4.6	0.9786
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10028311 [exp]	4.7	0.9710
AT1G47710			Serine protease inhibitor (SER...		Lus10005089 [exp]	4.9	0.9814

Compare expression of checked genes

Lus10037751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.