Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06660 179 / 1e-51 PAPA-1-like family protein / zinc finger (HIT type) family protein (.1) AT1G56460 177 / 5e-50 HIT zinc finger ;PAPA-1-like conserved region (.1.2) AT2G47350 160 / 1e-43 HIT zinc finger ;PAPA-1-like conserved region (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016899 [exp] 685 / 0 AT3G06660 214 / 1e-64 PAPA-1-like family protein / zinc finger (HIT type) family protein (.1) Lus10010914 [exp] 177 / 1e-49 AT1G56460 356 / 3e-117 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Lus10031419 [exp] 172 / 1e-47 AT1G56460 349 / 9e-115 HIT zinc finger ;PAPA-1-like conserved region (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G106200 [exp] 263 / 1e-83 AT3G06660 204 / 4e-61 PAPA-1-like family protein / zinc finger (HIT type) family protein (.1) Potri.005G014000 [exp] 192 / 4e-55 AT1G56460 250 / 1e-76 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Potri.013G008300 [exp] 189 / 5e-54 AT2G47350 268 / 3e-83 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Potri.002G195132 [exp] 182 / 1e-53 AT1G56460 236 / 5e-74 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Potri.014G119600 [exp] 186 / 9e-53 AT2G47350 272 / 1e-84 HIT zinc finger ;PAPA-1-like conserved region (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04795 [flax] [poplar] PAPA-1 PAPA-1-like conserved region CL0175 [flax] [poplar] TRASH PF04438 [flax] [poplar] zf-HIT HIT zinc finger
Representative CDS sequence Show only first row Show all	>Lus10037760 pacid=23167034 polypeptide=Lus10037760 locus=Lus10037760.g ID=Lus10037760.BGIv1.0 annot-version=v1.0 ATGGGTAGTCCTCCTGGGAATGGGATTGTTATTGCTGACCTTGGAAGCTTCATAGCAAGGAAGAAGAGGAGTTGTGCAACTCGTCGGCCGAAGAGAGTGT TTGGTGCTTACGGATTCAATCCACCGTCCACTTCTGCTGCTCAATCTCTAGGCAATGGGAATGGCCAGGAGGACTCACATTTAGGAACACCCAATGCTGA TGGATTGGGCGGCGGTGAGAAACGTTTGAAGAAGCTGAAACTGAAGGTTGGTGGTGTTACTCACACGATACACTCTAAGCCTGCTGCTGAATATGGCACC AGTGGTGGTGGGTCTTATGCCTCTAACTATCCTGAGAAGCAGCCTTTTCGGGATTCTAATTTTGGTAAGGAGAAGCCTTCAAGTGGAAAGATATCCAATG AAAATGTGTACGTAAACGAGCATGAAGCAACTCGTAAAAGTAAACGTGTTTCAAAGCGACGTAAGCTAGATCTTGGACTAGAGGAAGATGATGATAATGT GGATGAGGAGATACGTTATCTTGGAAGAATCAATGCTACTACCAGGGTATCTGCAAATGGTGAAGATTACACAGCTGGAACAGGAGTGATGCCATTGGAA GTTTCAGACATTGGGAGAGGGGGTTCAGAAGAGTGTGTTCTAGGAGAAAATGATCAATCTCTTTTGGATAAAACTAATAATAGACATAGAAGGTCTAGAA TTCGTCACGAAGATGATGGATACATGGAAGAAGAAGTTGTGTCTGATGAAATCAAGAAGTCTCAGTTTGGTGAAGGAGATAATGATAGAGATCATGTTAC CATGGATAGTGCTGTTTCACTTGTCAAAGATGTTTCGCTTAGATCTGGTTCCGGTCTTGTTGAGTTTCCAGATGGTTTGCCTGATGCACTTTGTAAAAAA AAGGGCAAAGTCTCTAACGTGGACCAACAGTTGAAAAAAGTCGAGGCTGCACAGAAGCGCAAAATGCAGGCAGAGAAGCTTGCTAAGGAGGCTGAGGCTG AGGCTATCAGAAGGATTTTGGGTCAAGATTCTAGTAGAAAGAAGAAGGAAGAAAAGATGAAGAAACAAAGAGATGATGCAGCTCAGGAAAAGGCTATCAA AGGAAACGCAATCGCGGCAAATACAGTTAGATGGGTCATTGGTCCTGCAGGCACTACCGTCACTTTCTCAGACGATCTCGGTTTGCCTCGGATATTCGAT TCAACCTCGTGCAGCTATCCTCCGCCAAGGGAGAAATGTGCAGGTCCGAACTGCACGAATGCATACAAATACCGGGATTCCAAGCTGAAGCTTCCTTTGT GCAGTCTTCAGTGTTACAAGGCAATTCAAGGAAAGGCGGTGGTGCATTGCTGA
AA sequence Show only first row Show all	>Lus10037760 pacid=23167034 polypeptide=Lus10037760 locus=Lus10037760.g ID=Lus10037760.BGIv1.0 annot-version=v1.0 MGSPPGNGIVIADLGSFIARKKRSCATRRPKRVFGAYGFNPPSTSAAQSLGNGNGQEDSHLGTPNADGLGGGEKRLKKLKLKVGGVTHTIHSKPAAEYGT SGGGSYASNYPEKQPFRDSNFGKEKPSSGKISNENVYVNEHEATRKSKRVSKRRKLDLGLEEDDDNVDEEIRYLGRINATTRVSANGEDYTAGTGVMPLE VSDIGRGGSEECVLGENDQSLLDKTNNRHRRSRIRHEDDGYMEEEVVSDEIKKSQFGEGDNDRDHVTMDSAVSLVKDVSLRSGSGLVEFPDGLPDALCKK KGKVSNVDQQLKKVEAAQKRKMQAEKLAKEAEAEAIRRILGQDSSRKKKEEKMKKQRDDAAQEKAIKGNAIAANTVRWVIGPAGTTVTFSDDLGLPRIFD STSCSYPPPREKCAGPNCTNAYKYRDSKLKLPLCSLQCYKAIQGKAVVHC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Lus10037760 [exp]	0	1
AT5G56590			O-Glycosyl hydrolases family 1...		Lus10012937 [exp]	1.4	0.9337
AT4G33940			RING/U-box superfamily protein...		Lus10014366 [exp]	3.3	0.8833
AT3G13690			Protein kinase protein with ad...		Lus10018944 [exp]	4.9	0.8824
AT5G01620		TBL35	TRICHOME BIREFRINGENCE-LIKE 35...		Lus10002858 [exp]	4.9	0.8871
AT2G26350		PEX10, ATPEX10	peroxin 10 (.1)		Lus10020007 [exp]	5.5	0.9026
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10032458 [exp]	6.0	0.8866
AT5G07900			Mitochondrial transcription te...		Lus10040817 [exp]	6.5	0.8897
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Lus10032542 [exp]	8.9	0.9053
AT3G15140			Polynucleotidyl transferase, r...		Lus10009194 [exp]	12.2	0.8910
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Lus10009265 [exp]	12.6	0.8858

Compare expression of checked genes

Lus10037760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.