Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50140 241 / 1e-73 Plant protein of unknown function (DUF247) (.1) AT3G50150 222 / 7e-67 Plant protein of unknown function (DUF247) (.1) AT3G50170 215 / 6e-64 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50120 214 / 1e-63 Plant protein of unknown function (DUF247) (.1) AT3G50130 213 / 8e-63 Plant protein of unknown function (DUF247) (.1) AT4G31980 212 / 1e-61 unknown protein AT5G22540 204 / 2e-60 Plant protein of unknown function (DUF247) (.1) AT3G50180 202 / 1e-58 Plant protein of unknown function (DUF247) (.1) AT3G50160 201 / 1e-58 Plant protein of unknown function (DUF247) (.1) AT3G50190 198 / 7e-58 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016900 [exp] 353 / 9e-117 AT3G17020 229 / 1e-72 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10039780 [exp] 266 / 2e-84 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 255 / 2e-80 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 218 / 6e-66 AT4G31980 251 / 5e-76 unknown protein Lus10010065 [exp] 217 / 3e-65 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 212 / 7e-63 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 207 / 2e-61 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10038339 [exp] 204 / 2e-60 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 196 / 2e-57 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G144200 [exp] 488 / 1e-171 AT3G50140 245 / 7e-76 Plant protein of unknown function (DUF247) (.1) Potri.013G146700 [exp] 234 / 2e-72 AT3G50150 233 / 2e-71 Plant protein of unknown function (DUF247) (.1) Potri.013G146400 [exp] 235 / 6e-72 AT3G50150 238 / 3e-72 Plant protein of unknown function (DUF247) (.1) Potri.013G146300 [exp] 225 / 1e-68 AT4G31980 217 / 1e-63 unknown protein Potri.019G108400 [exp] 222 / 1e-67 AT3G50150 253 / 8e-79 Plant protein of unknown function (DUF247) (.1) Potri.004G187100 [exp] 216 / 5e-65 AT5G22540 418 / 7e-144 Plant protein of unknown function (DUF247) (.1) Potri.007G047700 [exp] 216 / 2e-64 AT3G50120 721 / 0.0 Plant protein of unknown function (DUF247) (.1) Potri.013G146600 [exp] 210 / 3e-63 AT4G31980 236 / 1e-70 unknown protein Potri.018G029800 [exp] 198 / 1e-58 AT4G31980 317 / 1e-101 unknown protein Potri.003G181600 [exp] 193 / 9e-57 AT2G36430 241 / 5e-75 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [flax] [poplar] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10037762 pacid=23167213 polypeptide=Lus10037762 locus=Lus10037762.g ID=Lus10037762.BGIv1.0 annot-version=v1.0 ATGACCGGCCACCACCACCCGCCAAATCCGGAGCGGCGGAAGGAACACGTGGCAATCGAAATCCAACCCTCCGACGACAACAACCTCGTCTCCTCCATCA TGCGACAGATGGAAACTGTCTCCTCACTCCACTCAATCTGCCGCGTGAACCCCACACTCCGCGCGTCGAGCAAGAGATCGTACGTCCCCGACAAGGTCTC CATCGGTCCCTACCACCACGGTGCCGCAGCAGACGAGTCGCTGAAGACAATGGAAGACCACAAGTGGCGGTACGTGCACGCGCTCCTGAACCGGAAGCCG GAAATGGAAGCCAGCCTGGACGGCTGCGTTTCGGCGCTGAAGGAGCTGGAACAGAGGTGCCGAGCCTGCTATGCAGACGACGTCGGATTGTCGAGCCATG AATTCGTGAAGGTGATGTTCCTGGACGGGTGCTTCATCATCGAGCTGTTTCTGAAGCACTCCAACAAGGAGCTACGGCGTCGTAACGACCCGATTTTCAG CGTGCCTGGGATGCTGTTCGATCTGAGGTGCGATTTAATACTGCTGGAGAACCAAATCCCTCTATTTGTTCTTCAGAGGCTGTTCCAGCTTGTGCCGATT CCTAAGCAGTCGGCCGCTCTGTCTCTTCCGGAGCTTGCTTTCCGCTTCTTTAGGAATATGATTCCAGGAGACCCATTGAGCCACAGGGAGAAGTTCAACC AAGAGGGAAACCACCTACTGGACTTAATCTGCCACTGTCTACTCCCAACTCTTCCTAGACTCCCCCACTCAAAACCTCAAACACACTTACGCCCAGCATC CGATCTCCACAGCTCAGGGATCAGGATCAAGAAGGCCAAAACCAACAACTTACTCAACATCAAATTCGCAAACGGCGTCCTGCAGATCCCACCGATCCAA GTCCACCAGTACACAGAGTCCCTATTCCGGAACCTCATCGCCCTCGAACGTTGCTCCAACGTCCACCAGGGCAACGTGCACCATGTCACGTCGTACGTGG TGCTTATGGGGAGCTTGATCCGGAGCGAAAGGGACGTCAAATTGCTGAGGCAGCGAGAGATTCTGACGAGTTATGATGGTGATCAGAAAGTTGTGGAAGT GGGGAAGTTGTTTGAGAAGCTGTGTGAGGAAGTTGAGTTGAACGAGTCGTATTATGGCGGGGTTTGTGAGGTGGTGAATGGGTATAGGGGAAAGAATATA AGGGCATTGAAGAAGAAGTTGAAGCAACGACGTCATGGGAATTTGCATCGGCGTCGGCCGACGTTGAAATGGGTTTTGCTGGTTGCGGTTTTGGTGCTTT TGATTGCTCTGGTTGGGACTCTGTTCTCGGTCCTCACTTTTGTTCATCACAAGGTATAG
AA sequence Show only first row Show all	>Lus10037762 pacid=23167213 polypeptide=Lus10037762 locus=Lus10037762.g ID=Lus10037762.BGIv1.0 annot-version=v1.0 MTGHHHPPNPERRKEHVAIEIQPSDDNNLVSSIMRQMETVSSLHSICRVNPTLRASSKRSYVPDKVSIGPYHHGAAADESLKTMEDHKWRYVHALLNRKP EMEASLDGCVSALKELEQRCRACYADDVGLSSHEFVKVMFLDGCFIIELFLKHSNKELRRRNDPIFSVPGMLFDLRCDLILLENQIPLFVLQRLFQLVPI PKQSAALSLPELAFRFFRNMIPGDPLSHREKFNQEGNHLLDLICHCLLPTLPRLPHSKPQTHLRPASDLHSSGIRIKKAKTNNLLNIKFANGVLQIPPIQ VHQYTESLFRNLIALERCSNVHQGNVHHVTSYVVLMGSLIRSERDVKLLRQREILTSYDGDQKVVEVGKLFEKLCEEVELNESYYGGVCEVVNGYRGKNI RALKKKLKQRRHGNLHRRRPTLKWVLLVAVLVLLIALVGTLFSVLTFVHHKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50140			Plant protein of unknown funct...		Lus10037762 [exp]	0	1
AT5G06370			NC domain-containing protein-r...		Lus10004198 [exp]	2.2	0.8903
AT3G27390			unknown protein		Lus10032110 [exp]	4.5	0.8749
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10007774 [exp]	6.9	0.8626
AT2G45080		CYCP3;1	cyclin p3;1 (.1)		Lus10028174 [exp]	8.7	0.8592
AT1G07010		AtSLP1	Shewenella-like protein phosph...		Lus10031854 [exp]	11.2	0.8389
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10003488 [exp]	11.5	0.8497
AT2G17230		EXL5	EXORDIUM like 5 (.1)		Lus10013834 [exp]	15.4	0.8446
AT5G43950			Plant protein of unknown funct...		Lus10022871 [exp]	15.6	0.8327
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Lus10043063 [exp]	16.2	0.8690
AT3G53810			Concanavalin A-like lectin pro...		Lus10016507 [exp]	16.4	0.8432

Compare expression of checked genes

Lus10037762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.