Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G66658 944 / 0 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT1G74920 196 / 1e-55 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT3G48170 194 / 3e-55 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT1G79440 182 / 1e-50 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT1G23800 174 / 1e-47 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT3G48000 167 / 5e-45 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT3G24503 160 / 1e-42 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT2G24270 145 / 1e-37 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4) AT1G44170 143 / 6e-37 ALDH4, ALDH3H1 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) AT4G36250 140 / 1e-35 ALDH3F1 aldehyde dehydrogenase 3F1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016901 [exp] 1105 / 0 AT3G66658 1021 / 0.0 aldehyde dehydrogenase 22A1 (.1.2) Lus10034115 [exp] 197 / 2e-55 AT3G48170 825 / 0.0 aldehyde dehydrogenase 10A9 (.1) Lus10023625 [exp] 184 / 3e-51 AT3G24503 749 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10042149 [exp] 181 / 3e-50 AT1G74920 850 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10024259 [exp] 177 / 6e-49 AT3G24503 745 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10043470 [exp] 175 / 5e-48 AT1G74920 818 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10029166 [exp] 175 / 7e-48 AT1G23800 886 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10012999 [exp] 172 / 9e-47 AT1G23800 889 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10023626 [exp] 162 / 4e-43 AT3G24503 753 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G106000 [exp] 963 / 0 AT3G66658 1049 / 0.0 aldehyde dehydrogenase 22A1 (.1.2) Potri.012G075600 [exp] 197 / 3e-56 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.010G174000 [exp] 186 / 8e-52 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.015G070600 [exp] 184 / 2e-51 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.002G189900 [exp] 178 / 8e-49 AT1G23800 899 / 0.0 aldehyde dehydrogenase 2B7 (.1) Potri.018G075000 [exp] 172 / 5e-47 AT3G24503 751 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Potri.012G078700 [exp] 166 / 1e-44 AT3G48000 872 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.015G074100 [exp] 165 / 3e-44 AT3G48000 885 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.005G069800 [exp] 156 / 7e-41 AT4G34240 626 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.007G017100 [exp] 151 / 9e-40 AT4G36250 635 / 0.0 aldehyde dehydrogenase 3F1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10037763 pacid=23167360 polypeptide=Lus10037763 locus=Lus10037763.g ID=Lus10037763.BGIv1.0 annot-version=v1.0 ATGGCGTTCTGGTGGCCGTTGATTGTTCTAGCTCTAGCTTATGGCCTTTCTCGCTCCCTTTTTATGCCCATCCCGGTCAATGTCCCTCCCATCGACGTTG ACGTCTCCGACGTTTCCGAAGGGAATCAAGCTCAGGAGAACGACTTCATTTACATACCTCCGAGAGGAAGAACACAGCAATCGGAGAAAAAAGTTCAATG CTATGAGCCTGCTACCATGAAGTATTTGGGATACTTTCCTGCCTTATCGCCTTCTGAGGTCAAAGAACGTGTAGTTCTGGCAAAGAAGGCTCAGACAGTA TGGGCAAAAAGCAGCTTCAAGCAACGACGTCAGTTTCTGAGAATACTTTTGAAATACATTCTTGAGCATCAACAGCTCATATGCGAAATTTCTTCTCGTG ATACTGGAAAGACAATGGTTGATGCATCTTTGGGAGAAATAATGACTACTTGTGAGAAGATTACTTGGCTTATTGCAGAGGGTGAGCGGTGGCTAAAGCC TGAATACAGATCAACTGGGAGATCAATGATTCACAAGAAAGCTATGGTTGAGTTTCACCCTCTTGGTGTCATTGGCGCCATTGTTTCCTGGAACTACCCC TTCCACAATGTCTTCAATCCAATGCTGGCAGCAGTGTTTTCAGGCAATGGCATTGTAATCAAGGTCTCAGAACATGCAAGTTGGTCAGGATGTTTCTACT TCCGGATAATCCAAGCAGCTCTTGCTGCTGTTGGTGCTCCTGACAATCTGGTTGACGTAATAACAGGGTTTGCTGAAACAGGAGAAGCATTGGTGTCTTC AGTTGATAAAGTCATCTTTGTAGGATCTCCTGGAGTTGGTAAGACGATAATGAGGAATGCATCCACTAATCTTGTCCCAGTTACACTTGAGCTCGGCGGA AAAGATGCATTCATTGTATGTGATGATGTTGATGTGCCCCAGGTCGCACAAGTAGCTGTTAGGGCAGCACTTCAATCGAGCGGACAGAACTGTGCTGGGG CCGAAAGATTTTACGTTCACAAGGACGTTTATCCTTCATTTCTCAGCCAAGTTTCTAAGATCATAAAATCAGTCTCAGCTGGGCCACCGCTGGCTGGACG GTATGATATGGGAGCACTATGCATGCAAGAGCATGCCGAGAAGCTTCAAAACCTTGTAAATGACGCTCTGGAAAAGGGAGCAGAAATCGTCGCTCGAGGA AGTTTCGGTCATCTTGGCGAAGGTGCAGTCGATCAGTTTTTCCCCCCAACAGTGATTGTGAATGTCAATCACACCATGAAATTGATGCGAGAAGAGGCTT TTGGACCGATCATTCCGATTATGAAGTTCAGCAGCGACGAAGAGGCGATCAAGCTTGCAAACGACTCAAGATACGGGCTTGGCTGTGCTGTGTTTTCAGG CAGTCAACGCCGAGCCAAGGAGATAGCTTCACAGATACACTGTGGCGTGGCTGCATCCTTGCCATTCGGAGGCGTCAAAGACAGTGGATTCGGACGATTC GCTGGTATCGAAGGATTGCGAGCCTGCTGTCTAGTTAAATCGGTAGTCGAGGACAGATGGTGGCCTTACATCAAAACCAAGATACCCAAGCCCATCCAGT ACCCTGTTTCGGAGAATGGCTTCGAGTTTCAGGAATATCTCGTGGAAGCACTGTATGGGTTGAACATATGGGATCGCTTGCGAGCATTGGTTAACGTTCT GAAGTTCTTATCGGAGCAAAATTCTAGTAGTAGCACCGGGAAAAGAAGCGAGTGA
AA sequence Show only first row Show all	>Lus10037763 pacid=23167360 polypeptide=Lus10037763 locus=Lus10037763.g ID=Lus10037763.BGIv1.0 annot-version=v1.0 MAFWWPLIVLALAYGLSRSLFMPIPVNVPPIDVDVSDVSEGNQAQENDFIYIPPRGRTQQSEKKVQCYEPATMKYLGYFPALSPSEVKERVVLAKKAQTV WAKSSFKQRRQFLRILLKYILEHQQLICEISSRDTGKTMVDASLGEIMTTCEKITWLIAEGERWLKPEYRSTGRSMIHKKAMVEFHPLGVIGAIVSWNYP FHNVFNPMLAAVFSGNGIVIKVSEHASWSGCFYFRIIQAALAAVGAPDNLVDVITGFAETGEALVSSVDKVIFVGSPGVGKTIMRNASTNLVPVTLELGG KDAFIVCDDVDVPQVAQVAVRAALQSSGQNCAGAERFYVHKDVYPSFLSQVSKIIKSVSAGPPLAGRYDMGALCMQEHAEKLQNLVNDALEKGAEIVARG SFGHLGEGAVDQFFPPTVIVNVNHTMKLMREEAFGPIIPIMKFSSDEEAIKLANDSRYGLGCAVFSGSQRRAKEIASQIHCGVAASLPFGGVKDSGFGRF AGIEGLRACCLVKSVVEDRWWPYIKTKIPKPIQYPVSENGFEFQEYLVEALYGLNIWDRLRALVNVLKFLSEQNSSSSTGKRSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G66658		ALDH22A1	aldehyde dehydrogenase 22A1 (....		Lus10037763 [exp]	0	1
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10021040 [exp]	3.0	0.9380
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10035723 [exp]	4.0	0.9425
AT4G27760		FEY3, FEY	FOREVER YOUNG, NAD(P)-binding ...		Lus10028534 [exp]	4.1	0.9252
AT3G53110		LOS4	LOW EXPRESSION OF OSMOTICALLY ...		Lus10023886 [exp]	4.2	0.9346
AT3G08900		RGP3	reversibly glycosylated polype...		Lus10026676 [exp]	5.6	0.9446
AT1G80670		RAE1	RNA export factor 1, Transduci...		Lus10002323 [exp]	11.5	0.9372
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10034836 [exp]	12.2	0.9291
AT5G10160			Thioesterase superfamily prote...		Lus10015830 [exp]	14.7	0.9334
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10038008 [exp]	16.1	0.9176
AT2G40770			zinc ion binding;DNA binding;h...		Lus10012867 [exp]	16.2	0.9286

Compare expression of checked genes

Lus10037763 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.