Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17030 648 / 0 Nucleic acid-binding proteins superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016902 [exp] 1052 / 0 AT3G17030 699 / 0.0 Nucleic acid-binding proteins superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G144400 [exp] 783 / 0 AT3G17030 765 / 0.0 Nucleic acid-binding proteins superfamily (.1) Potri.008G105850 [exp] 82 / 1e-18 AT3G17030 62 / 1e-12 Nucleic acid-binding proteins superfamily (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037764 pacid=23167001 polypeptide=Lus10037764 locus=Lus10037764.g ID=Lus10037764.BGIv1.0 annot-version=v1.0 ATGAAAAACCCGCTCTTATCAGAGCAAGGCGAGTCAGATTCATCGGGGTTTGGACTTCGGGGGAGTGGGAGGCTTGCAAGTTGCAACTTCAAGTCGATGA GTTCATTTGCCAAGCAGCGAGAGGTTGATTGCCTGAATGCAGTGTGCTCCATGGATGTAGATTACAAAGAAGCAGACGATGAAGAAGATCCGTTCCTTGC TTTCGTTGATTACGCGAGCTCCGTACTGTCACCGGAGGAGGAAGACGGCGGAGGAGAAGGTTCTGATGCAACAGTAGACGAAGCTCATATCAACGGGCCT AGTTGGAACTGGATTGTAGCGCGGATCATGAAGACTTGTATCGCTTATTCCAGTGGAGTTACTGCTGGTATTCTACTATCGGAGCTCTCTCAGGCCTGGA GTGAGCAACATAGATTTCGAGCACCAAAGAAACGGCCGGAAATCATCAATCAATTGAAGAAGAAACACAAGAGAAGTAAGCTGCTAAACACTGTCACGAT CGATTCAATATACGAGAAGAATTTCCTCAAGCGAACTAACGTTCTGGAAGCTGTTATTGTAGATATCTTCGTTCTCCCTGAGTCAATGGCTTACAATTAT TTTCCTGCCAGATACTATGACTTGGTACACCCTCAGAGTGCGATCTTGAAGAAAGGGAGGGAGGTCTTTCTGACAGGATGCTATCTTCGTACAGCAAGAG AAGGATGTGGTTCTCCAAGACTGCTTCCAACTGAATACCTGGTCATTATATTAGATGATGTAAGTCACACATTGGGTTTTCCCTGCTCCTACTCTCTAGC TACAATTCCCCAAGTCAAGCGATCATGGATTCTTGGATTGATGTTGTTTGGTTGGCCTCACGGTTCAAATTTAATGGTGGATACTCAGGATCGTGATGAT GATGCAATGCTAATAGCAGCTCAGTTTTGTTCAGATACTTTCTCCTCTGTTTCTCTCAAACGGGCTAAAGATGGCGTTGCTTATTCTCTATATGGAAGGA TTGAATCTATCGGCCCACTGGAAGCAAAAGGGTCTGTTGGTAATGAAAGGAAGCAAATAACTCTCGTAGATGACGATGGCGTGAAGCTAGAATTTCTGTT GTGGGGTGAGCAGACTCTTCTAGCCAACTTTCTGAGTGTTGGAAGCATGATTGGCCTTGATCAGCCTTACATTGCAAGTTCGAGTGACAGTGCCGTCGAA AGCAGTGGTGACATTTGTCTAGAGTACGGAAGTGCCACTCAGCTGTATCTGGTCCCATTTGTTCAGCATGAAGAGCAAGTGTACATATCCTCTTCGCAGA ACCGATATCATGGATCAAGGTTGACGTTGACTGCTGCAGATCCTACACAGGGTCCCAAACTTTCACAGGTGACGTTACCATGTGATTCTCTAGGCTCAGT TGACTTCAGCAGTTATCCATTCCGAGTAAGCCATACTTCTCTCAAGTCCTATTGCGACAAGATGACTGGCATCAGCCTCTACGGTGTTGTGACAGACATT CGTCGTGAAAGAAGTACCACAAAAGCAATTTTCTCCCTGAGGATTGAGGATTCAACAGGGTCGATTTGCACGAAGCTCCACTTCGTTACATCTTGGTCGC TGGGAAGGTTGAGTCCAGGTCACACTGTTTTCATCTCGGGATTATCCAGCTACACAACGAACAAAAAACACCTTGAAGTGTCGTGGTTTGAGAATGAAGC CGGGTCGTCATTTGCGAACCTTAGTTGTTTGCCAGCTTTACTAAACTCCTCATGCCTCCATAAGTTATCTCGCCTCTCCGACCTGTCTAGCCATTCCAGC TCTACTTATATATGCAGAGTGCGGCTTGATCAGGTCGATCAATGCCACGTCAACACCGGATTTGCACACTCAATGTGTGGTCGGCCTGCTGTAAACACTC CGTCCGGGGACATGGAATGCAGCTTCTGTCAGTGCAGTTGCGGCAGCTCGGAGGTGGTCCGGACGTTTTACCTGAAGATCCCCGTTGCAGATGAAACGGG AAAGATATTTGGGTGGTGCAGTGGCCCTACAGCTGCGGAGATGCTGCAAATATCCTCTGATGAGTTCTGTCAGCTCCCGGAGGAAGAACAGTATATGTAT CCGTTGTCGCTGGAGAACGAACGCTTTGTAATTGCGTTGGTGAGTTCCAGGAGGGACGGATATGGTGTCGGTCATTGCATTGATGTGGAGGATGACACGG TTCTGTGGGAGATTACTCGTGCTCTCAATGTCAGCAATGGCTAG
AA sequence Show only first row Show all	>Lus10037764 pacid=23167001 polypeptide=Lus10037764 locus=Lus10037764.g ID=Lus10037764.BGIv1.0 annot-version=v1.0 MKNPLLSEQGESDSSGFGLRGSGRLASCNFKSMSSFAKQREVDCLNAVCSMDVDYKEADDEEDPFLAFVDYASSVLSPEEEDGGGEGSDATVDEAHINGP SWNWIVARIMKTCIAYSSGVTAGILLSELSQAWSEQHRFRAPKKRPEIINQLKKKHKRSKLLNTVTIDSIYEKNFLKRTNVLEAVIVDIFVLPESMAYNY FPARYYDLVHPQSAILKKGREVFLTGCYLRTAREGCGSPRLLPTEYLVIILDDVSHTLGFPCSYSLATIPQVKRSWILGLMLFGWPHGSNLMVDTQDRDD DAMLIAAQFCSDTFSSVSLKRAKDGVAYSLYGRIESIGPLEAKGSVGNERKQITLVDDDGVKLEFLLWGEQTLLANFLSVGSMIGLDQPYIASSSDSAVE SSGDICLEYGSATQLYLVPFVQHEEQVYISSSQNRYHGSRLTLTAADPTQGPKLSQVTLPCDSLGSVDFSSYPFRVSHTSLKSYCDKMTGISLYGVVTDI RRERSTTKAIFSLRIEDSTGSICTKLHFVTSWSLGRLSPGHTVFISGLSSYTTNKKHLEVSWFENEAGSSFANLSCLPALLNSSCLHKLSRLSDLSSHSS STYICRVRLDQVDQCHVNTGFAHSMCGRPAVNTPSGDMECSFCQCSCGSSEVVRTFYLKIPVADETGKIFGWCSGPTAAEMLQISSDEFCQLPEEEQYMY PLSLENERFVIALVSSRRDGYGVGHCIDVEDDTVLWEITRALNVSNG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17030			Nucleic acid-binding proteins ...		Lus10037764 [exp]	0	1
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Lus10013481 [exp]	2.0	0.9533
AT1G04020		ROW1, ATBARD1, ...	breast cancer associated RING ...		Lus10022895 [exp]	2.2	0.9596
AT1G79890			RAD3-like DNA-binding helicase...		Lus10037548 [exp]	2.8	0.9481
AT3G59550		ATSYN3, SYN3, A...	SISTER CHROMATID COHESION 1 PR...		Lus10037478 [exp]	3.0	0.9522
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Lus10033489 [exp]	4.5	0.9384
AT5G22110		DPB2, CYL2, DBP...	CYCLOPS 2, DNA polymerase epsi...		Lus10042296 [exp]	7.0	0.9339
AT1G18090			5'-3' exonuclease family prote...		Lus10027250 [exp]	9.4	0.9240
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10036769 [exp]	11.3	0.9338
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Lus10007944 [exp]	11.6	0.9297
AT3G27640			Transducin/WD40 repeat-like su...		Lus10014560 [exp]	12.0	0.9236

Compare expression of checked genes

Lus10037764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.