Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04690 384 / 2e-128 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT5G28680 377 / 2e-125 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT3G51550 368 / 1e-121 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT5G54380 328 / 6e-107 THE1 THESEUS1, protein kinase family protein (.1) AT3G46290 325 / 9e-106 HERK1 hercules receptor kinase 1 (.1) AT5G59700 319 / 1e-103 Protein kinase superfamily protein (.1) AT5G61350 314 / 1e-101 Protein kinase superfamily protein (.1) AT4G39110 313 / 6e-101 Malectin/receptor-like protein kinase family protein (.1) AT2G21480 310 / 1e-99 Malectin/receptor-like protein kinase family protein (.1) AT5G24010 308 / 2e-99 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016907 [exp] 459 / 2e-157 AT3G04690 967 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10042537 [exp] 366 / 9e-122 AT3G04690 942 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10022728 [exp] 365 / 7e-121 AT3G51550 1184 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10014185 [exp] 365 / 2e-120 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10021998 [exp] 362 / 5e-120 AT3G04690 929 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10038595 [exp] 326 / 3e-111 AT5G54380 718 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10037887 [exp] 331 / 8e-108 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10042844 [exp] 321 / 2e-104 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10028140 [exp] 321 / 2e-104 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G105500 [exp] 398 / 1e-133 AT3G04690 999 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.010G145600 [exp] 380 / 1e-126 AT3G04690 1027 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.005G055200 [exp] 374 / 2e-124 AT5G28680 1026 / 0.0 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) Potri.013G042500 [exp] 373 / 6e-124 AT3G04690 1036 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.016G138700 [exp] 370 / 1e-122 AT3G51550 1252 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.006G110000 [exp] 369 / 3e-122 AT3G51550 1256 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096400 [exp] 326 / 1e-110 AT3G51550 451 / 6e-151 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.001G405500 [exp] 330 / 2e-107 AT5G54380 1232 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.017G095900 [exp] 330 / 4e-107 AT3G51550 845 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.009G026600 [exp] 327 / 1e-106 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10037767 pacid=23167045 polypeptide=Lus10037767 locus=Lus10037767.g ID=Lus10037767.BGIv1.0 annot-version=v1.0 ATGGCACTTGTCTACGATTACATGGCGAACGGAACCCTAAGAGAGCATCTCTACAAAGGGAACAACCCGTCGTTGCCGTGGAAGCAGAGATTGGAGATCT GCATCGGAGCAGCAAGAGGATTGCATTATCTCCACACAGGAGCGAAGTACACCATCATCCACCGCGACGTAAAGACGACGAACATTCTTCTGGACGATAA ATGGGTGGCGAAGGTATCGGACTTCGGACTATCCAAAACCGGCCCGAATCTGAACAACCAGGCGCACGTTAGCACTGTGGTGAAAGGGAGCTTCGGGTAC TTGGATCCGGAGTATTTCAGAAGGCAGCAGTTAACGGAGAAATCAGACGTGTACTCATTCGGAGTCGTTTTGTTCGAGGTCCTATGTGCTAGGCCGGCTC TGAACCCTAGCTTGCCCAAAGAGCAAGTCAGCTTAGGGGATTGGGCGCTTCAATGCCAGAGGAAAGGGAAACTGGAGGACATAATCGATCCGCTGTTGAA AGGAGATATACACAAAGAATGTCTTAAGAAATTCGCCGAGACGGCTGAGAAATGCTTGTCGGATGCAGGGATTCGTCGGCCTTCCATGGGAGATGTGCTC TGGAACTTGGAATTTGCCCTGCGATTACAGGAGAATCCAAACGCTTCCACCGTAGAGAAAGGGGAGGAGATCGGCGCCGGCGGTAGTGGAGGCCGGAAGA GGGGACTGTCGATTGTAGAAGAAGAGGTTAGTGTAGTGGCGGACGAAGACACCGACGATACTGAAATTTTTTCGCAGATAGTGAATCCTAAAGGAAGATA G
AA sequence Show only first row Show all	>Lus10037767 pacid=23167045 polypeptide=Lus10037767 locus=Lus10037767.g ID=Lus10037767.BGIv1.0 annot-version=v1.0 MALVYDYMANGTLREHLYKGNNPSLPWKQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDDKWVAKVSDFGLSKTGPNLNNQAHVSTVVKGSFGY LDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPALNPSLPKEQVSLGDWALQCQRKGKLEDIIDPLLKGDIHKECLKKFAETAEKCLSDAGIRRPSMGDVL WNLEFALRLQENPNASTVEKGEEIGAGGSGGRKRGLSIVEEEVSVVADEDTDDTEIFSQIVNPKGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10037767 [exp]	0	1
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10037768 [exp]	1.7	0.8791
AT5G16620		PDE120, TIC40, ...	pigment defective embryo 120, ...		Lus10002287 [exp]	6.9	0.8247
AT1G64910			UDP-Glycosyltransferase superf...		Lus10002350 [exp]	10.5	0.7376
AT3G54640		TRP3, TSA1	TRYPTOPHAN-REQUIRING 3, trypto...		Lus10002719 [exp]	11.3	0.7333
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Lus10025022 [exp]	13.0	0.8083
AT4G20430			Subtilase family protein (.1.2...		Lus10008060 [exp]	13.1	0.8425
AT3G20230			Ribosomal L18p/L5e family prot...		Lus10007379 [exp]	15.3	0.8423
AT1G20830		MCD1	multiple chloroplast division ...		Lus10030727 [exp]	19.4	0.7845
AT5G48720		XRI1, XRI	x-ray induced transcript 1 (.1...		Lus10025920 [exp]	22.9	0.7772
AT4G17040		HON5, CLPR4	happy on norflurazon 5, CLP pr...		Lus10011014 [exp]	23.5	0.8222

Compare expression of checked genes

Lus10037767 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.