Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04690 396 / 4e-128 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT5G28680 379 / 2e-121 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT3G51550 286 / 3e-86 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT5G39030 244 / 3e-71 Protein kinase superfamily protein (.1) AT5G39000 239 / 6e-69 Malectin/receptor-like protein kinase family protein (.1) AT5G39020 216 / 8e-61 Malectin/receptor-like protein kinase family protein (.1) AT5G38990 201 / 3e-55 Malectin/receptor-like protein kinase family protein (.1) AT1G30570 184 / 1e-49 HERK2 hercules receptor kinase 2 (.1) AT5G61350 169 / 2e-44 Protein kinase superfamily protein (.1) AT4G00300 152 / 5e-40 fringe-related protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016907 [exp] 792 / 0 AT3G04690 967 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10021998 [exp] 322 / 3e-100 AT3G04690 929 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10042537 [exp] 321 / 8e-100 AT3G04690 942 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10014185 [exp] 280 / 1e-83 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10022728 [exp] 222 / 1e-62 AT3G51550 1184 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10003942 [exp] 206 / 3e-57 AT3G51550 656 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10032976 [exp] 199 / 2e-54 AT3G51550 682 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10032971 [exp] 196 / 1e-53 AT3G51550 706 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10037887 [exp] 173 / 1e-45 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G145600 [exp] 451 / 2e-149 AT3G04690 1027 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.008G105500 [exp] 444 / 1e-146 AT3G04690 999 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.013G042500 [exp] 358 / 2e-113 AT3G04690 1036 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.005G055200 [exp] 357 / 3e-113 AT5G28680 1026 / 0.0 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096600 [exp] 292 / 2e-88 AT3G51550 829 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G095900 [exp] 287 / 2e-86 AT3G51550 845 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096000 [exp] 285 / 2e-85 AT3G51550 832 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096800 [exp] 280 / 3e-84 AT3G51550 823 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.006G110000 [exp] 276 / 2e-82 AT3G51550 1256 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.016G138700 [exp] 263 / 1e-77 AT3G51550 1252 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Lus10037768 pacid=23167295 polypeptide=Lus10037768 locus=Lus10037768.g ID=Lus10037768.BGIv1.0 annot-version=v1.0 ATGAAATGCCGTACATGCCTCTTGTTTTCTTCCATCCTCTTGTTTATATTGTTAGCAAAGGCAAACCCGGCTCTGGCTCAGGCGCCGGCGCCGGCTCCAA CGAAGGCGCCGCCGAAATCGAAATGTTTCATCGTATCGTGTGGCACCACGGAGGAAGAAGCCGACGCCAACGGCGAGAAATGGAAACCGGACGACGAATA CCTCAATCCCTCCGGCTCCGGGGAGGCCGCTACAGCGTCGTATCAGGACCCTTCTCTTGACTCTACCGTGCCGTTCATGTCCGCCCGGATTTTCAAGTCT CCCGGTGGTTATAAATTCTCCGTCCCGTCCGATGCACGTGTCATGATCCGGTTCTACTTCTACGCTGCCACGTACGGGGACCTCGACGCTGGAAATTCCT ATTTTACCCTCACGGCGAATGGCTACCAGCTCCTCAACAACTTCAGCGCTTCCATCGTGTCCAAGGCGCTCACCCAGACGTACCTCGTCAAAGAATTCTC GCTTTTGCCCCCGCCGTCGGGTTCTGTTGACGTCGTCTTCACCCCGTCCAAGGATTACAAGGATTCGTTCGCCTTTGTCAACGGGATCGAGGTCATCCCG ATGATGGACATCTACAATGACTCTCCGCCGTTGACGGGGTTCACGGACCAGATGGTGGATTTGACGGCGTATAGCTTGCAGACGATGTACAGGGTGAACG TCGGCGGGCAGGTGATTCCTCCGTTGAATGATTCGGCTGGGCTGGAGAGGACTTGGTACAACGACGCTCCTTATCTTTACGGCAAAGTTGGAGGAAGGAC GCCGGCGTTTCCCGTAAGTACAATCAAGTACCCGACTAAACAAGTACCCGAATCCGTCGCCCCGGCTTTGGTCTACTCCACCGGCCGAACCATGCTTGAG AACGCCATAGTGAACCGGAATATCAACCTGACGTGGATTTTCCAGGTGGACGTCAATTACACCTACTTCGTCCGTCTCCACTTTTGCGACGGCGAAATGG GGAGATCCAACCAGCGTGTCTTCCACATCTATGTCAACAACCGGACAGCACAGAACACCGCCGACGTGGTCGGCTGGTCCGGCGGCAAGGGGATTCCAAT CTACAAGGACTACGCCGTCTACCAAAACGAGAAGAGCGGCGATAATCTGTGGCTTGCCCTCTCCCCCAACGGCGACAGCCACCCGGAATTCTACGATGCA ATCCTAAACGGAATAGAGGTCTTCAAGCTCAACAACGTGAAGAAAAGCTTCGCAGCCCCGAACCCGGAGATTTCGGAGATGATGTCCCGAGCAGAGGAAG CCATGAAGAAGAAGAGCTTCGCCTCCGGATCCGGAACCGCGCAGGTGATCGGTGCAATCGCCGGAGGAGCCACCGGAATGACCCGCCGGAATGGCGGCGG TGATCGTCGTCTCCGCCGTCGTGTTCAACAAGAAGCGCCGACTAAGCAGCTCCCCATCATCGAGCTCCAACAATTGGCTCCCGCTGTACGGAAACTCGCA CTTCTCGGGGAAATCGACGGTGTCGAGGAAGAGCAACAACAGCAGCAACCTGTCGTCGATAGCGCAGGGGCTGTGTCGGCATTTCTCGCTACAGGAGATC AAGCACGCGACGAAGAATTTCGACGAAGGGAAAGTGATCGGAGTTGGAGGGTTCGGGAAAGTGTACAGAGGAGTAATCGACGGCGGAGCGATGCAGGTGG CAATCAAGAGATCGAATCCGCAATCGGAGCAGGGAGTCAACGAATTCGAGACTGA
AA sequence Show only first row Show all	>Lus10037768 pacid=23167295 polypeptide=Lus10037768 locus=Lus10037768.g ID=Lus10037768.BGIv1.0 annot-version=v1.0 MKCRTCLLFSSILLFILLAKANPALAQAPAPAPTKAPPKSKCFIVSCGTTEEEADANGEKWKPDDEYLNPSGSGEAATASYQDPSLDSTVPFMSARIFKS PGGYKFSVPSDARVMIRFYFYAATYGDLDAGNSYFTLTANGYQLLNNFSASIVSKALTQTYLVKEFSLLPPPSGSVDVVFTPSKDYKDSFAFVNGIEVIP MMDIYNDSPPLTGFTDQMVDLTAYSLQTMYRVNVGGQVIPPLNDSAGLERTWYNDAPYLYGKVGGRTPAFPVSTIKYPTKQVPESVAPALVYSTGRTMLE NAIVNRNINLTWIFQVDVNYTYFVRLHFCDGEMGRSNQRVFHIYVNNRTAQNTADVVGWSGGKGIPIYKDYAVYQNEKSGDNLWLALSPNGDSHPEFYDA ILNGIEVFKLNNVKKSFAAPNPEISEMMSRAEEAMKKKSFASGSGTAQVIGAIAGGATGMTRRNGGGDRRLRRRVQQEAPTKQLPIIELQQLAPAVRKLA LLGEIDGVEEEQQQQQPVVDSAGAVSAFLATGDQARDEEFRRRESDRSWRVRESVQRSNRRRSDAGGNQEIESAIGAGSQRIRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10037768 [exp]	0	1
AT5G20950			Glycosyl hydrolase family prot...		Lus10010657 [exp]	1.0	0.8983
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10037767 [exp]	1.7	0.8791
AT3G20230			Ribosomal L18p/L5e family prot...		Lus10007379 [exp]	6.0	0.8933
AT1G14410		WHY1, ATWHY1, P...	A. THALIANA WHIRLY 1, ssDNA-bi...		Lus10037206 [exp]	11.3	0.8670
AT1G62760			Plant invertase/pectin methyle...		Lus10031132 [exp]	11.7	0.8594
AT5G16620		PDE120, TIC40, ...	pigment defective embryo 120, ...		Lus10002287 [exp]	14.1	0.8302
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10041654 [exp]	14.7	0.8574
AT4G20430			Subtilase family protein (.1.2...		Lus10008060 [exp]	16.6	0.8601
AT5G47500		PME5	pectin methylesterase 5, Pecti...		Lus10004720 [exp]	18.2	0.8634
AT4G14723		EPFL4, CLL2	epidermal patterning factor li...		Lus10021901 [exp]	21.2	0.8384

Compare expression of checked genes

Lus10037768 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.