Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49460 1115 / 0 ACLB-2 ATP citrate lyase subunit B 2 (.1) AT3G06650 1112 / 0 ACLB-1 ATP-citrate lyase B-1 (.1) AT5G23250 102 / 1e-23 Succinyl-CoA ligase, alpha subunit (.1.2) AT5G08300 96 / 2e-21 Succinyl-CoA ligase, alpha subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016910 [exp] 1196 / 0 AT5G49460 1111 / 0.0 ATP citrate lyase subunit B 2 (.1) Lus10040992 [exp] 100 / 7e-23 AT5G08300 591 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10010187 [exp] 97 / 9e-22 AT5G08300 588 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10017389 [exp] 97 / 1e-21 AT5G08300 588 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10010185 [exp] 85 / 2e-18 AT5G08300 377 / 1e-132 Succinyl-CoA ligase, alpha subunit (.1) Lus10013440 [exp] 53 / 4e-07 AT5G08300 422 / 3e-148 Succinyl-CoA ligase, alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G105300 [exp] 1166 / 0 AT5G49460 1131 / 0.0 ATP citrate lyase subunit B 2 (.1) Potri.010G145766 [exp] 652 / 0 AT5G49460 612 / 0.0 ATP citrate lyase subunit B 2 (.1) Potri.010G145832 [exp] 478 / 6e-168 AT5G49460 459 / 2e-161 ATP citrate lyase subunit B 2 (.1) Potri.005G091400 [exp] 101 / 3e-23 AT5G23250 515 / 0.0 Succinyl-CoA ligase, alpha subunit (.1.2) Potri.015G028200 [exp] 80 / 5e-16 AT5G23250 507 / 0.0 Succinyl-CoA ligase, alpha subunit (.1.2) Potri.012G036200 [exp] 77 / 5e-15 AT5G23250 496 / 6e-178 Succinyl-CoA ligase, alpha subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00285 [flax] [poplar] Citrate_synt Citrate synthase, C-terminal domain CL0506 [flax] [poplar] Succ_CoA_synth PF00549 [flax] [poplar] Ligase_CoA CoA-ligase
Representative CDS sequence Show only first row Show all	>Lus10037770 pacid=23167290 polypeptide=Lus10037770 locus=Lus10037770.g ID=Lus10037770.BGIv1.0 annot-version=v1.0 ATGGCTACTGGACAACTCTTTTCTCGAACCACACAAGCGTTGTTCTACAACTACAAGCAGCTTCCTATTCAGCGGATGCTTGATTTCGACTTCCTCTGTG GGAGGGAAACTCCTTCTGTAGCTGGCATTATCAACCCTGGATCTGAGGGATTTCAGAAACTGTTTTTTGGCCAAGAGGAAATTGCCATCCCAGTACATGG AACCGTTGAGGCGGCTTGTGCTGCTCATCCTACTGCCGATGTATTTATAAACTTTGCTTCATTTAGAAGTGCTGCTGCATCATCCATGGCAGCTCTCAAA CAGCCAACAATACGAGTTGTGGCCATAATAGCTGAGGGTGTTCCCGAGTCTGACACCAAACAGTTGATCGCATTTGCACGTTCTAACAATAAGGCGAGAG TTGTTGTTATTGGCCCTGCTACTGTTGGAGGAATCCAAGCTGGAGCATTCAAAATTGGTGACACTGCAGGAACTATTGATAATATTATATCTTGCAAGCT TTACAGGCCAGGGTCTGTGGGATTTGTGTCAAAATCAGGTGGCATGTCAAATGAGCTTTACAGTTCCATTGCTCGTGTAACAGATGGTATTTATGAAGGT ATTGCAATTGGAGGAGACGTGTTCCCGGGCTCAACACTCTCTGATCATGTTTTGAGGTTTAACAACATCCCTCAGGTTAAGATGATAGTGGTGCTCGGAG AACTTGGTGGACGAGATGAATATTCCCTTGTCGAAGCTCTCAAACAGGGGAAAGTTAACAAACCGGTTGTTGCTTGGGTCAGCGGAACTTGTGCTACGCT TTTCAAGTCAGAAGTACAATTTGGCCATGCTGGTGCTAAAAGTGGGGGTGAATTGGAGTCTGCACAAGCAAAAAACCAAGCTCTAGCTGATGCTGGAGCA GTTGTTCCTACATCATATGAAGCTTTTGAGGCTTCCATTAAAGAAACTTTTGAGAAACTGGTTGAAGCAGGGAAGATTGAATCAGTGAAGGAGTTTACCC CTCCACCAATTCCTGAGGATCTCAACATTGCAATAAAGAGTGGCAAAGTTCGAGCTCCAACTCATATTATTTCCACCATTTCTGATGACAGAGGAGAGGA ACCATGCTACGCTGGTGTGCCAATGTCTTCCATTGTTGAGCAGGGTTATGGTGTTGGTGATGTCATCTCTCTTTTATGGTTCAAGCGCAGTCTCCCACGC TACTGTACCAAATTTATTGAGATATGTATCATGTTGTGTGCCGACCATGGTCCCTGTGTCTCAGGTGCTCACAACACCATTGTAACAGCAAGGGCTGGAA AGGACCTTGTTTCCAGCCTTGTATCAGGTTTGTTAACTATTGGTCCTCGATTTGGTGGTGCCATTGATGATGCAGCACGATACTTCAAGGATGCTTATGA CAAGGGGCTGTCACCCTACGAGTTTGTTGAGAGCATGAAAAAGAAGGGCATTCGTGTTCCTGGAATCGGCCATAGGATAAAGAGAGGCGACAACAGGGAT AAGAGAGTGGAGCTGTTGCAAGAATTTGCTCGCACCCATTTCCCATCGGTGAAGTACATGGAGTACGCTGTTCAAGTGGAGACCTACACTCTCTCCAAGG CCAACAACTTAGTCCTCAACGTAGATGGCGCAATCGGATCCCTATTCCTAGATCTCCTCGCTGGCAGCGGAATGTTCAGCAAGCCAGAGATCGACGAGAT CGTCGGGATTGGATATTTGAATGGCCTCTTCGTTCTGGCTCGTTCCATCGGTCTCATCGGGCATACGTTTGACCAGAAGAGGCTCAAACAGCCCCTATAC CGTCACCCATGGGAGGACGTTCTGTACACCAAGTGA
AA sequence Show only first row Show all	>Lus10037770 pacid=23167290 polypeptide=Lus10037770 locus=Lus10037770.g ID=Lus10037770.BGIv1.0 annot-version=v1.0 MATGQLFSRTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHGTVEAACAAHPTADVFINFASFRSAAASSMAALK QPTIRVVAIIAEGVPESDTKQLIAFARSNNKARVVVIGPATVGGIQAGAFKIGDTAGTIDNIISCKLYRPGSVGFVSKSGGMSNELYSSIARVTDGIYEG IAIGGDVFPGSTLSDHVLRFNNIPQVKMIVVLGELGGRDEYSLVEALKQGKVNKPVVAWVSGTCATLFKSEVQFGHAGAKSGGELESAQAKNQALADAGA VVPTSYEAFEASIKETFEKLVEAGKIESVKEFTPPPIPEDLNIAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIVEQGYGVGDVISLLWFKRSLPR YCTKFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAYDKGLSPYEFVESMKKKGIRVPGIGHRIKRGDNRD KRVELLQEFARTHFPSVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGMFSKPEIDEIVGIGYLNGLFVLARSIGLIGHTFDQKRLKQPLY RHPWEDVLYTK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Lus10037770 [exp]	0	1
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Lus10016910 [exp]	1.0	0.9783
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001291 [exp]	2.0	0.9448
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Lus10029001 [exp]	4.5	0.9195
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Lus10023936 [exp]	4.6	0.9222
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10013032 [exp]	6.7	0.8982
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10031497 [exp]	8.4	0.9137
AT3G13772		AtTMN7	transmembrane nine 7 (.1)		Lus10037643 [exp]	10.5	0.8957
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10026336 [exp]	10.6	0.9072
AT1G15020		QSO2, ATQSOX1	quiescin-sulfhydryl oxidase 1 ...		Lus10034639 [exp]	10.7	0.8499
AT4G04040		MEE51	maternal effect embryo arrest ...		Lus10037972 [exp]	11.0	0.8892

Compare expression of checked genes

Lus10037770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.