Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49470 828 / 0 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT3G06620 820 / 0 PAS domain-containing protein tyrosine kinase family protein (.1) AT1G67890 807 / 0 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT3G06640 742 / 0 PAS domain-containing protein tyrosine kinase family protein (.1) AT3G06630 719 / 0 protein kinase family protein (.1) AT4G23050 359 / 1e-112 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT5G11850 358 / 1e-110 Protein kinase superfamily protein (.1) AT1G08720 353 / 3e-108 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT1G73660 350 / 2e-106 protein tyrosine kinase family protein (.1) AT1G18160 344 / 2e-104 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016912 [exp] 1184 / 0 AT1G67890 848 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10040540 [exp] 907 / 0 AT3G06620 858 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1) Lus10017844 [exp] 377 / 8e-119 AT4G23050 520 / 4e-175 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10024502 [exp] 375 / 1e-118 AT4G23050 579 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10027247 [exp] 356 / 5e-109 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1) Lus10004124 [exp] 352 / 1e-108 AT1G08720 948 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10000937 [exp] 352 / 1e-108 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10031341 [exp] 351 / 2e-108 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10038955 [exp] 342 / 5e-104 AT1G18160 978 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G105100 [exp] 970 / 0 AT5G49470 948 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) Potri.010G146000 [exp] 968 / 0 AT3G06620 953 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1) Potri.003G122700 [exp] 388 / 6e-124 AT4G23050 606 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Potri.013G034800 [exp] 360 / 7e-111 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.005G047600 [exp] 360 / 1e-110 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.018G053800 [exp] 352 / 1e-107 AT5G11850 517 / 2e-169 Protein kinase superfamily protein (.1) Potri.006G229400 [exp] 351 / 3e-107 AT5G11850 520 / 2e-170 Protein kinase superfamily protein (.1) Potri.016G095750 [exp] 342 / 5e-105 AT5G03730 970 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.015G040100 [exp] 345 / 3e-104 AT1G73660 593 / 0.0 protein tyrosine kinase family protein (.1) Potri.006G115800 [exp] 338 / 1e-103 AT5G03730 957 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0183 [flax] [poplar] PAS_Fold PF00989 [flax] [poplar] PAS PAS fold
Representative CDS sequence Show only first row Show all	>Lus10037772 pacid=23167379 polypeptide=Lus10037772 locus=Lus10037772.g ID=Lus10037772.BGIv1.0 annot-version=v1.0 ATGGACACGCCTCCGACGGAGGAGCTCCTGCGGAAGATTCAGGAGCTGGAAGCCGGACAAGCTGAGCTTCTGCAAGAGATGACCAGGCTTAGACTCACCT CCGATCCGAAATCGGATGATCTGCTCTCGCTGCACCACCACCATCACCATCATCATCACCATCCTCGCTCTCAGTCCATTTCTCCCCAGCGTCCAGGGAC TAGACGGACCTTCGAGTCTTCTTCGAGTATGAACAAGACCTCGCCGCCGTTTAGGCATTCGTCTCCCTTGCAGAGAGAGTCTCGTCAGCTGGCCAGCGCC TCGAATAGAAGTAATGTCGGTGCGGGTGGCGGCAGCGGGAGTGGGAGTGGGAGTGGGAGTACTCCTGGTCCGCCGGCTATCAAGTTTACGGATAGGCAGT ACTTGAATATATTGCAGTCTATGGGGCAGTCCATACATATCTTTGCTGTTGATGGCCGTCTTATCTACTGGAATCGAACTGCTGAAAACCTTTTTGGTTA CACCGCGGTGGAAGCTCTTGGTCAGCCCGGTATTGATCTGATGGTAGATCCCAGGGATCGAGCGATGGCGCATACTATTGTTGGCCGGAACAAAATGGGA GAGAGATGGACAGGACGGTTCCCTGTGAGGACTAAGCGTGGAGACAGGTTTTCGATTATGGCGACCAATACCCCCTTCTACGACGATGACGGTACTTTGA TTGGGGTTGTATCTGTCAGTAATGATGCACGAAACTTCGAAGAAGTAGCGGCTGAGATCTCTGATCCCAGACATTCAGAGGCAGAGTCAGCTACTAGTCG TGCTAGAAGTACGGTGACCAATAAACTTGGTCTAGACCCGCAGCAACCTCTGCAAGTAGCAATTGCGTCTAAAATATCAAACCTGGCCTCTAAACAGGCA ACCAAGGTGAGCAACAAGGTCAAATCGAAAATTCGAACTGGAGAGAACAATATCGATCGCGAAGGTGGTAGTGGAGATAGTCATCATTCCGACCATGGCT ACTCGGATGCAGGTATCAATGACCACAGGGACGATGCAAACTCTAGTGGGGCTAGTACACCCCGGGCCGCCACACCAAGGGGAGTTTTTGATCCATCTCC TTTTCACGTTTCTCACGCTGAAAATAAGTCCTCAGTAAGATACCCAGGTCATCCAGTAGATGATAATGAAGGAAAGCCAGCTATCCACAAGATTATCTCC TCAAAAGCAGAAGCCTGGATGGGTAAAAAGGGATTGTCATGGCCCTGGAAAGGTAATGAAAGGGACGTTATTGGAGTAAGAACCCCAAAATTTGTGTGGC CATGGTTGCAGAATGATCAAGAGAATGAAACGAATCATCCGAAAAGTTCCTCTTATGGTACAAAGTTTGAGAGCCACTCAGGTGAAGGTCATAGGCATAC TAGTAACGAGCTTGGGTCTTGGTCATCGTCTGCGAATGTCAACAGCACAAGCAGTGTCAGTAGTTCTGGCAGCACAAGTAGCAGTGCTGTTAACAGGGTA GACTTAGAATCTGACTGCTTGGACTATGAGATACTCTGGGAGGATTTGACTATTGGAGAACAAATTGGACAAGGGTCTTGTGGGACAGTCTATCATGCCC TGTGGTACGGATCAGATGTTGCCGTCAAGGTATTCTCCAAGCAAGAGTATTCTGAAGATGTGATATTTTCATTTCGACAAGAGGTATCTCTAATGAAAAG ACTTCGCCATCCAAATGTGCTACTCTTTATGGGCGCTGTGACCTCACCTCAGCGTCTCTGCATCGTTACAGAGTTCCTACCTCGTGGAAGTTTGTTCCGA TTACTCCAAAGGAACACAACCAAACTAGATTGGAGACGTAGAGTACACATGGCAATGGATATCGCTAGGGGTATGAACTATCTTCATCATTACAACCCAC CCATTATTCATCGTGACTTGAAGTCTTCAAATCTTCTTGTTGACAAAAATTGGACAGTGAAGGTTGGTGATTTTGGGCTATCACGTCTAAAGCATGAAAC ATATCTGACAACTAAAACTGGGAAAGGCACGCCTCAATGGATGGCACCAGAAGTTCTCCGCAACGAACCGTCAGATGAGAAGTCTGACATCTACAGCTTC GGCGTAATATTGTGGGAAATCGCAACAGAGAAAATCCCTTGGGATACTCTCAACTCCATGCAGGTAATTGGTGCTGTAGGCTTCATGAACCAACGGCTAG AAATACCAAAAGACGTGGATCCGCGTTGGGTCGCTATAATCGAGAGCTGCTGGCGCAGCGACCCAAGTACCCGTCCGTCGTTCCAAGAACTACTGGACAA GCTGAGAGACCTTCAGAGACAGTTAACAATCCAGTTACAAGCAGCACGTTCTTCTGCAATCACCGCGGCTCGAAAGGAAAGCAACAAAGACGAGGAAGAG TGA
AA sequence Show only first row Show all	>Lus10037772 pacid=23167379 polypeptide=Lus10037772 locus=Lus10037772.g ID=Lus10037772.BGIv1.0 annot-version=v1.0 MDTPPTEELLRKIQELEAGQAELLQEMTRLRLTSDPKSDDLLSLHHHHHHHHHHPRSQSISPQRPGTRRTFESSSSMNKTSPPFRHSSPLQRESRQLASA SNRSNVGAGGGSGSGSGSGSTPGPPAIKFTDRQYLNILQSMGQSIHIFAVDGRLIYWNRTAENLFGYTAVEALGQPGIDLMVDPRDRAMAHTIVGRNKMG ERWTGRFPVRTKRGDRFSIMATNTPFYDDDGTLIGVVSVSNDARNFEEVAAEISDPRHSEAESATSRARSTVTNKLGLDPQQPLQVAIASKISNLASKQA TKVSNKVKSKIRTGENNIDREGGSGDSHHSDHGYSDAGINDHRDDANSSGASTPRAATPRGVFDPSPFHVSHAENKSSVRYPGHPVDDNEGKPAIHKIIS SKAEAWMGKKGLSWPWKGNERDVIGVRTPKFVWPWLQNDQENETNHPKSSSYGTKFESHSGEGHRHTSNELGSWSSSANVNSTSSVSSSGSTSSSAVNRV DLESDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSEDVIFSFRQEVSLMKRLRHPNVLLFMGAVTSPQRLCIVTEFLPRGSLFR LLQRNTTKLDWRRRVHMAMDIARGMNYLHHYNPPIIHRDLKSSNLLVDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDIYSF GVILWEIATEKIPWDTLNSMQVIGAVGFMNQRLEIPKDVDPRWVAIIESCWRSDPSTRPSFQELLDKLRDLQRQLTIQLQAARSSAITAARKESNKDEEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06620			PAS domain-containing protein ...		Lus10037772 [exp]	0	1
AT1G04830			Ypt/Rab-GAP domain of gyp1p su...		Lus10037829 [exp]	1.0	0.9164
AT1G04300			TRAF-like superfamily protein ...		Lus10021216 [exp]	3.5	0.9119
AT1G04300			TRAF-like superfamily protein ...		Lus10022207 [exp]	3.5	0.9145
AT1G04300			TRAF-like superfamily protein ...		Lus10021218 [exp]	5.5	0.8971
AT5G53000		TAP46	2A phosphatase associated prot...		Lus10041409 [exp]	8.4	0.8859
AT3G51830		ATG5, SAC8	SAC domain-containing protein ...		Lus10009080 [exp]	9.2	0.9035
AT3G08790			ENTH/VHS/GAT family protein (....		Lus10011689 [exp]	10.0	0.9006
AT1G53390		ABCG24	ATP-binding cassette G24, P-lo...		Lus10037981 [exp]	12.0	0.8663
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10016578 [exp]	13.1	0.8782
AT5G22450			unknown protein		Lus10020607 [exp]	14.1	0.8581

Compare expression of checked genes

Lus10037772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.