Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16230 188 / 1e-59 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G23540 168 / 2e-50 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 158 / 2e-46 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G41890 145 / 9e-42 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 122 / 1e-32 GLIP7 GDSL-motif lipase 7 (.1) AT1G71691 119 / 2e-31 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G55050 116 / 1e-30 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 115 / 3e-30 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29670 113 / 1e-29 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G08460 112 / 3e-29 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016918 [exp] 356 / 2e-123 AT2G23540 381 / 6e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005238 [exp] 222 / 4e-71 AT2G23540 369 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005236 [exp] 219 / 3e-70 AT2G23540 390 / 1e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016775 [exp] 164 / 1e-48 AT2G23540 592 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10022471 [exp] 161 / 1e-47 AT2G23540 589 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10021664 [exp] 127 / 9e-35 AT1G74460 526 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 125 / 7e-34 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10001643 [exp] 125 / 7e-34 AT1G74460 530 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10018641 [exp] 123 / 4e-33 AT5G37690 516 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G104600 [exp] 211 / 4e-67 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.007G036300 [exp] 150 / 2e-43 AT2G23540 554 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G104700 [exp] 148 / 1e-42 AT2G23540 280 / 1e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.017G102100 [exp] 125 / 5e-34 AT5G15720 264 / 5e-86 GDSL-motif lipase 7 (.1) Potri.004G112700 [exp] 123 / 3e-33 AT5G15720 249 / 7e-80 GDSL-motif lipase 7 (.1) Potri.012G068700 [exp] 119 / 1e-31 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G067600 [exp] 118 / 2e-31 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008300 [exp] 115 / 4e-30 AT1G29670 318 / 6e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G086700 [exp] 114 / 4e-30 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.019G008100 [exp] 114 / 6e-30 AT1G29670 356 / 4e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10037776 pacid=23167025 polypeptide=Lus10037776 locus=Lus10037776.g ID=Lus10037776.BGIv1.0 annot-version=v1.0 ATGGGTAGTACTCTTGCCAGTAGAGTCCTCACAGTTCTTCTTGTCTCAATCCTCGTAGCATCAGGAATCCGCCTCACCATCGGCGGCTGCGACTGCAGTC CCAATGTAGTCAGCTTAGTGTTCGGGGACTCATTAGTCGATTCCGGAAACAACTACATCGTCTCCCTGCCGAAGGCCAACTACCTTCCGAACGGTGGTGT CGATTTCGGAAAATCGACCGGACGTTACACCAACGGAAGAACCATCGCTGACGTCATAGGCCAGGAAGGGGTCAACTATGCTTCTGGCGCCAGAGGCATT CTCAACGACACCGGCAAGATTTTCGGCGGCCTGATCAACTTGGACGCACAGATTGACAACTTTGCGGAAACGAAGAAAGAGACCATATCGATGATCGGTG ATAGCGAAAGGAGAGAAGCTTTTGGAAACGGCGTTGTATTCCCTTCAACCCCTCCGGAGAAGTACGTGGCCAAAATGATCGACAAGTTAACACTCCAACT TACGCGACTGTATGACTTGGGGGCCCGAAAGATTGTGGTGGTGAACGTGGGCCCAATTGGTTGCATTCCGTACATGAGAGACGTGAACCCTTTGTTGGGG GATAAATGCGCGGAGTTTCCGAATAAGTTGGTTCGGTCTTACAACGTCAAGTTAAAGACGAACGTTCAAGGACTGAGTAAATCCGCGAAGGGATCGTATT TTGTCTAA
AA sequence Show only first row Show all	>Lus10037776 pacid=23167025 polypeptide=Lus10037776 locus=Lus10037776.g ID=Lus10037776.BGIv1.0 annot-version=v1.0 MGSTLASRVLTVLLVSILVASGIRLTIGGCDCSPNVVSLVFGDSLVDSGNNYIVSLPKANYLPNGGVDFGKSTGRYTNGRTIADVIGQEGVNYASGARGI LNDTGKIFGGLINLDAQIDNFAETKKETISMIGDSERREAFGNGVVFPSTPPEKYVAKMIDKLTLQLTRLYDLGARKIVVVNVGPIGCIPYMRDVNPLLG DKCAEFPNKLVRSYNVKLKTNVQGLSKSAKGSYFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16230			GDSL-like Lipase/Acylhydrolase...		Lus10037776 [exp]	0	1
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10001774 [exp]	3.6	1.0000
					Lus10025806 [exp]	5.9	1.0000
					Lus10004351 [exp]	6.5	1.0000
					Lus10022996 [exp]	6.6	1.0000
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	9.8	1.0000
					Lus10016867 [exp]	10.6	1.0000
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10013823 [exp]	10.7	1.0000
					Lus10033373 [exp]	12.2	1.0000
AT2G33470		ATGLTP1, GLTP1	ARABIDOPSIS GLYCOLIPID TRANSFE...		Lus10008244 [exp]	12.5	1.0000
AT3G57030			Calcium-dependent phosphotries...		Lus10009015 [exp]	13.0	1.0000

Compare expression of checked genes

Lus10037776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.