Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16210 360 / 1e-123 ECHIA, E-COAH-2 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) AT4G16800 84 / 9e-18 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT1G60550 81 / 2e-16 ECHID, DHNS enoyl-CoA hydratase/isomerase D (.1) AT5G43280 77 / 4e-16 ATDCI1 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) AT3G06860 76 / 1e-14 ATMFP2, ATMPF2, MFP2 multifunctional protein 2 (.1) AT4G29010 75 / 4e-14 AIM1 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) AT2G30660 67 / 7e-12 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT5G65940 64 / 4e-11 CHY1 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) AT2G30650 56 / 3e-08 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT3G24360 56 / 3e-08 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016920 [exp] 450 / 6e-159 AT4G16210 395 / 1e-140 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Lus10016919 [exp] 268 / 7e-89 AT4G16210 206 / 1e-67 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Lus10006501 [exp] 90 / 2e-19 AT3G06860 504 / 4e-175 multifunctional protein 2 (.1) Lus10037495 [exp] 90 / 6e-19 AT3G06860 1170 / 0.0 multifunctional protein 2 (.1) Lus10043224 [exp] 84 / 7e-17 AT4G29010 1063 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Lus10011336 [exp] 80 / 2e-16 AT5G43280 404 / 8e-144 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Lus10002583 [exp] 78 / 8e-16 AT5G43280 399 / 1e-141 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Lus10011102 [exp] 79 / 2e-15 AT4G29010 1043 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Lus10013023 [exp] 76 / 9e-15 AT1G60550 514 / 0.0 enoyl-CoA hydratase/isomerase D (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G146400 [exp] 397 / 5e-138 AT4G16210 418 / 2e-149 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Potri.008G104500 [exp] 393 / 9e-137 AT4G16210 422 / 3e-151 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Potri.001G153300 [exp] 103 / 2e-24 AT4G16800 346 / 8e-120 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.008G220400 [exp] 99 / 8e-22 AT3G06860 1161 / 0.0 multifunctional protein 2 (.1) Potri.010G011900 [exp] 92 / 1e-19 AT3G06860 1154 / 0.0 multifunctional protein 2 (.1) Potri.018G082900 [exp] 87 / 7e-18 AT4G29010 1094 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Potri.001G061000 [exp] 83 / 1e-17 AT5G43280 379 / 1e-133 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Potri.001G329900 [exp] 78 / 1e-15 AT1G60550 550 / 0.0 enoyl-CoA hydratase/isomerase D (.1) Potri.014G179000 [exp] 60 / 1e-09 AT5G65940 556 / 0.0 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G018800 [exp] 60 / 2e-09 AT4G31810 565 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00378 [flax] [poplar] ECH_1 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Lus10037777 pacid=23167119 polypeptide=Lus10037777 locus=Lus10037777.g ID=Lus10037777.BGIv1.0 annot-version=v1.0 ATGGATCAGTCGGATCTAATCTTGGTGACCCGAGAACCGAACGGCGTAGCCACGATCACTATCAACCGTCCCAAATCAATGAATTCCCTCACCAGAGCCA TGATGGCCCGCCTCGCCCGGGAGTTCAACGCCCTCGGCCGCGATGAAACGGTGAAGGTCATCATCTTGACCGGCGCCGGGCGATCGTTCTGCTCCGGCGT CGATCTCACGGCGGCGGAGGACGTTTTCAAGGGGGACGTGAAGGATGTCGAGACCGACCTGGTGGCGCAGATGGAGCTGTGCAAGAAGCCTATAATTGGG GCGATCAACGGGTTCGCGGTCACCGCCGGTTTCGAGATCGCGCTCGCCTGCGACGTTTTGATCGCTTCTCGAGGAGCTAAATTCATGGACACCCACGCCA GCCTCAGTAGCTCCCCGTACACAATTGGCTACAATCCGTCTCAACAAATTTTCCCACAAGTTTATTCTTCTTTCCCTCTTTCGGTCCACAATTCACCTCA AATGGATCCGCCGACTGATCTAATCTTGGTAACCCGAGACCCGACCGGCGTAGCCATGGTCACCATCAACAGTCCCAAATCGCTGAATTCCCTCACCAGA GCCGTAATTGTCCAACTCGCTGGGGAGTTCGGCACCCTAGCCCGCAACGAATCCGTCAAGGTAATCATCTTGACCGGCTCGGGGCGATCGTTCTGCTCCG GTGTCGATCTCACGACAGCTGAGGACGTTTTCAAGGGCGACGTCAAGGATGTCGAGACCGACATGGTCGCGCAGATGGAGCTGTGCAAGAAGCCTATAAT CGGGGCGATCAACGGGTTTGCTATCACCGCCGGATTCGAGCGCGCTCTCGCCTGCGATATTTTGATCGCTGTAGAGGAGCTATCTTCATTGACACGCACG CCAGTTCAAGCCACTGAACTTTTTAAAATGTATAGAATGGCCACTTCTCATATGTTTCCTTTGATTCTGTTTGGGATATTTCCTTCATGGGGTCTTTCCC AGAAGCTGTCACGGCTAATAGGGGTTAACAGAGCTAGGGAAGTGTCCTTGACAGCGGGGCCGATAACTGCGGAGCAGGCTGAGAAATGGGGGCTGGTGAA TCACCTTGTAGAAGAAGGAGAATCGCTAAAGAAAGCGCATGAAGTGGCGGGAGCCATATTAAAGAACAATCAGGACTTGGTGTTGAGGTACAAAGCCGTG ATTAACGACGGGCTTAAACTGGATTTGGGTTCTGCTCTTTCTCTTGAGAAGGAAAGGGCGCATAAGTACTACGATGGGATGACAAAGGAGCAATTCAAGA AGATGCAGGAGTTTGTAGCTGGCCGCAGCTCGAAGAAGCCTTCTTCTAAGTTGTAA
AA sequence Show only first row Show all	>Lus10037777 pacid=23167119 polypeptide=Lus10037777 locus=Lus10037777.g ID=Lus10037777.BGIv1.0 annot-version=v1.0 MDQSDLILVTREPNGVATITINRPKSMNSLTRAMMARLAREFNALGRDETVKVIILTGAGRSFCSGVDLTAAEDVFKGDVKDVETDLVAQMELCKKPIIG AINGFAVTAGFEIALACDVLIASRGAKFMDTHASLSSSPYTIGYNPSQQIFPQVYSSFPLSVHNSPQMDPPTDLILVTRDPTGVAMVTINSPKSLNSLTR AVIVQLAGEFGTLARNESVKVIILTGSGRSFCSGVDLTTAEDVFKGDVKDVETDMVAQMELCKKPIIGAINGFAITAGFERALACDILIAVEELSSLTRT PVQATELFKMYRMATSHMFPLILFGIFPSWGLSQKLSRLIGVNRAREVSLTAGPITAEQAEKWGLVNHLVEEGESLKKAHEVAGAILKNNQDLVLRYKAV INDGLKLDLGSALSLEKERAHKYYDGMTKEQFKKMQEFVAGRSSKKPSSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10037777 [exp]	0	1
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Lus10001719 [exp]	1.7	0.8753
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10016919 [exp]	3.3	0.8936
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Lus10016577 [exp]	4.6	0.8647
AT2G25670			unknown protein		Lus10033084 [exp]	4.6	0.8411
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10018477 [exp]	5.5	0.8693
AT3G48980			Arabidopsis thaliana protein o...		Lus10039227 [exp]	6.3	0.8606
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Lus10029820 [exp]	6.9	0.8710
AT4G27880			Protein with RING/U-box and TR...		Lus10022405 [exp]	8.2	0.8790
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10041953 [exp]	9.9	0.8611
AT1G73480			alpha/beta-Hydrolases superfam...		Lus10009041 [exp]	10.7	0.8169

Compare expression of checked genes

Lus10037777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.