Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53025 255 / 1e-80 Ubiquitin-conjugating enzyme family protein (.1) AT2G16920 262 / 3e-79 UBC23 ,PFU2 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) AT3G15355 250 / 6e-78 UBC25 ,PFU1 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) AT1G53023 241 / 6e-78 Ubiquitin-conjugating enzyme family protein (.1) AT2G33770 242 / 8e-73 ATUBC24, UBC24, PHO2 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) AT5G41700 78 / 3e-17 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT4G27960 77 / 6e-17 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT1G64230 77 / 7e-17 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT5G53300 76 / 1e-16 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT3G08690 72 / 2e-15 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016921 [exp] 495 / 4e-178 AT2G16920 235 / 3e-70 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10040748 [exp] 372 / 1e-128 AT2G16920 244 / 1e-72 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10034472 [exp] 271 / 4e-84 AT2G16920 907 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10028151 [exp] 262 / 2e-83 AT1G53025 388 / 2e-129 Ubiquitin-conjugating enzyme family protein (.1) Lus10025070 [exp] 265 / 8e-81 AT2G16920 1209 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10018596 [exp] 249 / 3e-79 AT3G15355 339 / 3e-111 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Lus10039831 [exp] 244 / 5e-77 AT3G15355 335 / 6e-110 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Lus10001214 [exp] 246 / 7e-77 AT2G33770 508 / 9e-171 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Lus10005854 [exp] 241 / 1e-72 AT2G33770 785 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G146500 [exp] 352 / 2e-120 AT2G33770 255 / 3e-77 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.008G104400 [exp] 347 / 1e-118 AT3G15355 267 / 7e-84 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.011G118800 [exp] 263 / 1e-82 AT3G15355 411 / 1e-135 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.004G043500 [exp] 265 / 2e-81 AT2G33770 823 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.013G130800 [exp] 257 / 2e-81 AT3G15355 334 / 1e-107 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.001G400300 [exp] 255 / 1e-79 AT3G15355 383 / 5e-125 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.004G176000 [exp] 255 / 1e-76 AT2G16920 1045 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Potri.011G052600 [exp] 252 / 2e-76 AT2G33770 796 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.009G136000 [exp] 251 / 2e-75 AT2G16920 1069 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Potri.013G108500 [exp] 154 / 3e-44 AT2G16920 152 / 9e-41 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10037778 pacid=23167233 polypeptide=Lus10037778 locus=Lus10037778.g ID=Lus10037778.BGIv1.0 annot-version=v1.0 ATGTCTACTCCGCCTCCCGCCACCGCCGCCTCCTTCCAGCGATTCGACTCCGCCTCCGACCCATCCGACCACAGCTTCTACTCCGCCACTAAGCCCCCTA CCTCCATCCCAAAGTCCGTCTCCAACAAGATTATGCAAGAATGGAAGATCCTCGAGAAGCACCTCCCCGATTCCATCTCCGTACGGGTCTACGAGGACCA GATCGACATCCTCCGCGCCGTCATCGTCGGCGCCGCCGGAACTCCTTACCACGACGGTCTATACTTCTTCGACATTGCCTTTCCAACCGATTACCCCAAA TCCCCTCCCAAAGTCATGTACAGGTCGTCCGGGCTTCGGATCAACCCGAATCTCTACGCCAACGGCCGGGTCTGCCTCAGCCTGATCAACACGTGGAGCG GGAAGCGGGTCGAGAAGTGGAACCCGGCCGAATCGACGATTCTCCAGGTGCTGCTCTCGATCCAGGGGCTGGTCTTGAATGAGAGGCCCTATTTTAACGA GCCGGGGGCTGGGATGTTCCCCGGGAAGAAGGATCGGAGGTCGACTGCGTATAATGAGGATGTTTTCGTTCTCTGCTGCAAGACGATGTTGTTCTTGATG AGGAATCCGCCGAGGAATTTCGAAGGTTTTGTACGGTCGCATTTCAAGGAGAGGGCGGTTGCGATTCTTTCGGCGATGCGTGCTTATGCGGGTGGGGAGT GTAGGATCGGGTATTACGGGACGGAGGAAGGGGCGAATTCGTTGCCGGTGAAAGGTGAGCCGTCGGCGAAATTCAAGGGGTGGATTACGCAGCTGCAGTT GGAGCTGAGTGCTGCTTTTGTGAAAGTAGGTGCGCCTGTGGGGAATTTCGTCGAACAGCTGGAGAGCGAGAAGGCGGCGAGGCTGAAGAAGACGAAGAAG CCGGAGAAGAAGGAGAAGGGGCCGGAGAAGAAGAGTGGGGTGGTGAAGAGGCTTTTGGGGAAAGTAAAGGAGATTCTGGGATTGAAGAAGAAGAAGAAGA CGACAACTGGAGGGACCCCATAG
AA sequence Show only first row Show all	>Lus10037778 pacid=23167233 polypeptide=Lus10037778 locus=Lus10037778.g ID=Lus10037778.BGIv1.0 annot-version=v1.0 MSTPPPATAASFQRFDSASDPSDHSFYSATKPPTSIPKSVSNKIMQEWKILEKHLPDSISVRVYEDQIDILRAVIVGAAGTPYHDGLYFFDIAFPTDYPK SPPKVMYRSSGLRINPNLYANGRVCLSLINTWSGKRVEKWNPAESTILQVLLSIQGLVLNERPYFNEPGAGMFPGKKDRRSTAYNEDVFVLCCKTMLFLM RNPPRNFEGFVRSHFKERAVAILSAMRAYAGGECRIGYYGTEEGANSLPVKGEPSAKFKGWITQLQLELSAAFVKVGAPVGNFVEQLESEKAARLKKTKK PEKKEKGPEKKSGVVKRLLGKVKEILGLKKKKKTTTGGTP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10037778 [exp]	0	1
AT5G47890			NADH-ubiquinone oxidoreductase...		Lus10011053 [exp]	4.5	0.7820
AT1G58170			Disease resistance-responsive ...		Lus10026176 [exp]	4.9	0.8100
					Lus10029150 [exp]	14.1	0.7744
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10043184 [exp]	15.6	0.7461
AT2G31200		ADF6, ATADF6	actin depolymerizing factor 6 ...		Lus10022933 [exp]	17.5	0.7785
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Lus10012785 [exp]	18.3	0.7162
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10014001 [exp]	21.1	0.7411
AT4G33355			Bifunctional inhibitor/lipid-t...		Lus10023087 [exp]	21.2	0.7548
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10043185 [exp]	22.5	0.7381
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025397 [exp]	23.2	0.7599

Compare expression of checked genes

Lus10037778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.