Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17090 563 / 0 Protein phosphatase 2C family protein (.1.2) AT4G38520 446 / 1e-156 Protein phosphatase 2C family protein (.1.2) AT5G66080 440 / 2e-154 Protein phosphatase 2C family protein (.1) AT3G51370 435 / 2e-152 Protein phosphatase 2C family protein (.1.2) AT3G12620 421 / 4e-147 Protein phosphatase 2C family protein (.1.2) AT3G55050 420 / 1e-146 Protein phosphatase 2C family protein (.1.2) AT5G06750 365 / 7e-125 Protein phosphatase 2C family protein (.1.2.3) AT5G02760 362 / 7e-124 Protein phosphatase 2C family protein (.1) AT4G33920 360 / 5e-123 Protein phosphatase 2C family protein (.1) AT3G16560 137 / 3e-36 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017061 [exp] 553 / 0 AT3G17090 426 / 1e-150 Protein phosphatase 2C family protein (.1.2) Lus10027825 [exp] 467 / 7e-165 AT4G38520 586 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10005054 [exp] 463 / 2e-163 AT4G38520 582 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10025076 [exp] 462 / 9e-163 AT4G38520 609 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10024008 [exp] 458 / 2e-161 AT4G38520 605 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10041861 [exp] 447 / 5e-157 AT3G51370 630 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10023470 [exp] 431 / 1e-150 AT3G12620 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10040346 [exp] 426 / 7e-149 AT3G12620 616 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10030302 [exp] 418 / 9e-146 AT3G12620 597 / 0.0 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G104300 [exp] 611 / 0 AT3G17090 568 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G146700 [exp] 610 / 0 AT3G17090 554 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.004G177100 [exp] 467 / 6e-165 AT4G38520 608 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.009G137400 [exp] 457 / 4e-161 AT4G38520 657 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.007G061100 [exp] 452 / 4e-159 AT3G51370 590 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G108500 [exp] 447 / 3e-157 AT3G51370 646 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G046900 [exp] 425 / 2e-148 AT3G12620 543 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G214700 [exp] 424 / 3e-148 AT3G12620 542 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G082800 [exp] 392 / 5e-136 AT3G12620 502 / 4e-179 Protein phosphatase 2C family protein (.1.2) Potri.006G192600 [exp] 388 / 7e-134 AT5G06750 572 / 0.0 Protein phosphatase 2C family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10037779 pacid=23167006 polypeptide=Lus10037779 locus=Lus10037779.g ID=Lus10037779.BGIv1.0 annot-version=v1.0 ATGCTTCAGGCATTGATGAATCTGCTTTCCCTATGCTTCAGGCCCTTCGGTCGTACTTCTAATAGCGTCGGCGGTAGAGAAGGTGAAGGCAAGGAAGGCC TCCTTTGGTACAGGGATATATGCAAGTATGCCTCCGGAGACTTCTCTATGGCGGTTGTTCAAGCCAATCAAGTGATCGAGGACCAGAGCCAGGTCGAGTC TGGCCCCTTTGGAACCTTCGTCGGCGTCTACGACGGCCATGGCGGTCCTCAGACTGCTCGCTACGTCTGCGATCACTTGTTCAATAACTTTCGAGCTATA TCAGCAGAGACAGAAGGTGTTGTGACTGCTGACACCATTCGAAGAGCCTTTCGAGTCACTGAGGAAGGGTTTACTTCAGTTGTCTCTGAGTTATGGAGTA CTCAGCCTCAAATAGCCACCGCTGGAACGTGTTGCCTGGTGGGAGTAATATTCCAGCAGACCCTTTTCGTCGCGAACCTGGGAGACTCTCGTGTCGTCTT GGGGAAGAAGGTTGGTAATACTGGTGGAATCGCTGCTCTCCAGTTGTCCACCGAACATAATGCAAACCTTGAGGCCATTAGACATGAACTTAAGGAGTTG CATCCATCTGATCCTCAGATTGTGGTGCTGAGGCATGGTGTTTGGAGAGTCAAAGGAATTATTCAGGTTTCAAAATCTATGGGAGATGTCTACCTGAAAC ATGCACGGTTTAACAGAGAACCAATAAATGCAAAATTCAGACTTCCTCAACCAATCGACATGCCTATCTTGAGTGCCGATCCGACGATCCTAACTCATTC TATCCATCCAAGCGACTCCTTTCTTATATTTGCATCTGATGGTCTATGGGAACACTTGAGCAATGAAAAGGCTGTGGATATTGTCCACAGCCATCCACAT GCAGGAAGCGCGAAGAGACTAGTGAAGGCAGCTCTGCAGGAAGCGGCGAGAAAGCGAGAGATGAGGTACTCGGACTTGAGGAAGATCGACAAGAAAGTGA GGCGGCATTTCCACGACGACATAACAGTCATAGTTTTGTTCTTGGATCATGATGCTATATCCAGAGGAGGGATGGGCCAACCCCCTCCTACAGTCTCGGT CCGCAGTGCTTTGGAGCACTGA
AA sequence Show only first row Show all	>Lus10037779 pacid=23167006 polypeptide=Lus10037779 locus=Lus10037779.g ID=Lus10037779.BGIv1.0 annot-version=v1.0 MLQALMNLLSLCFRPFGRTSNSVGGREGEGKEGLLWYRDICKYASGDFSMAVVQANQVIEDQSQVESGPFGTFVGVYDGHGGPQTARYVCDHLFNNFRAI SAETEGVVTADTIRRAFRVTEEGFTSVVSELWSTQPQIATAGTCCLVGVIFQQTLFVANLGDSRVVLGKKVGNTGGIAALQLSTEHNANLEAIRHELKEL HPSDPQIVVLRHGVWRVKGIIQVSKSMGDVYLKHARFNREPINAKFRLPQPIDMPILSADPTILTHSIHPSDSFLIFASDGLWEHLSNEKAVDIVHSHPH AGSAKRLVKAALQEAARKREMRYSDLRKIDKKVRRHFHDDITVIVLFLDHDAISRGGMGQPPPTVSVRSALEH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17090			Protein phosphatase 2C family ...		Lus10037779 [exp]	0	1
AT3G17090			Protein phosphatase 2C family ...		Lus10017061 [exp]	4.2	0.7433
AT5G62720			Integral membrane HPP family p...		Lus10036673 [exp]	8.9	0.7242
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10011262 [exp]	9.8	0.7944
AT3G58060			Cation efflux family protein (...		Lus10029304 [exp]	14.7	0.7120
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Lus10030539 [exp]	66.3	0.6841
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10012056 [exp]	89.6	0.6487
AT2G45050	GATA	GATA2	GATA transcription factor 2 (....		Lus10042879 [exp]	122.6	0.6826
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10005772 [exp]	143.9	0.6698
AT2G40230			HXXXD-type acyl-transferase fa...		Lus10028983 [exp]	151.5	0.6724
AT3G02900			unknown protein		Lus10009524 [exp]	181.4	0.6415

Compare expression of checked genes

Lus10037779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.