Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16180 1182 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017062 [exp] 1540 / 0 AT4G16180 1226 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G146800 [exp] 1255 / 0 AT4G16180 1235 / 0.0 unknown protein Potri.008G104100 [exp] 155 / 3e-44 AT4G16180 143 / 8e-41 unknown protein Potri.017G078700 [exp] 45 / 0.0002 AT3G28720 823 / 0.0 unknown protein Potri.004G123900 [exp] 44 / 0.0005 AT3G28720 852 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037780 pacid=23167110 polypeptide=Lus10037780 locus=Lus10037780.g ID=Lus10037780.BGIv1.0 annot-version=v1.0 ATGGCTGGTAAATCGGTGTCAAATTCGTCATCTCACGATTCGATTCTATCACTGTCTCTTCTTCTGCTGCTGCTCTTGACTCGCTCCGACTCCGCGCCGC AACCGTTCCGTAGAGACCCAGGCCATGCTCAATGGCATCACGGAGCCTTTCACGATGTTAAAGAGACGGTCCGATCCGATGTTCGCCGCATGCTCCACAC TCGCGCCGAGGTTCCGTTTCAGGTTCCGCTGGAGGTCAATGTTGTCCTTGTCGGTTTTGGTGGCGATGGAGGCTATAGATACAGCTTGGATGTGAATAAG CTGGAGGAGTTTTTGAAACTCAGCTTTCCTACTCACAGACCGTCGTGCTTAGAGACCGGCGAGCTTCTGGATATTGAGCATCACCTCATCTATAATGTGT TTCCTGCTGGGCAGGCAGAACTGATTGCTCTAGAGAAAGCATTGAAAGAGGCTATGGTTCCTGCAGGGTCTGCTAGAGAGACTGATTTTGGAAGGGAGGT CCCATTATTTGAGGTGGAGGCAACTACTCTGGAGCCTGTATTTCAAAAATTCCATTCCTACATCTTTGACACCGAAGCTATGGAGTCCTCAGGAGATGCA GAGCACGATAGGCCTGCTCCTGTTGCTATCTTTCTTGCCAACTTCGACAAGGTCAGGATGGATCCCAGGAACAAGGAAATTGATCTTGATAGGTTGATGT TTAGCAAAATCGAGACATTGTCTGAAGAAGAACTGAAGAAACAAGAGGGCGACTATATTTATCGGTACAAATATAATGGAGGAGGAGCAAGTCAAGTCTG GCTGAGCTCAGACAGGTTTGTCGTGATTGACTTATCAGCTGGTCCCTGTACATATGGCAAGATCGAAACTGAAGAGGGAAGCGTTAGTACTAGAACAATG CCTCGGATAAGGAATGTGGTACTTCCAAAAGGATCTGGTATAGGAACTATTAGTGATTATTCCAGCCCTGAGATATTTCTTGGGCAAATTTCTGCTCTGG TGTCAACCACCGTTGAGCATGTTATAGCTCCAGATGTCAGGTTTGAGACTGTTGACCTGACAACTAGGTTGCTTGTACCAATCATCGTGCTTCAAAATCA CAATAGATACAATATCATGCAATCTGGCCATAACTACAGCATAGACACATCGGAAATTGAGACAGAGGCGAGTGAAATTGCTTGGAGTTGTTCTTTTTTA TATTTGAATTGGTTGAGGAAGATGATTCACAATGAGCAAGAAGTCGTAGTGGTGGGTGGTTCACATTCATTACATCGTCATGAAAAGTTGGCAATTGCTG TCTCGAAAGCAATGCGTGGGCATTCACTACAGGAGACTAGAAAGGATGGACGCTTCCATGTTCACACCAAAACATATCTGGATGGAGCTGTACTCAAAGA AGAAATGGAACGGTCGGCTGATGTGCTTGCTGCTGGTTTACTAGAGGTGGCAGACCCCTCTCTGTCTAGTAAATTTTTCCTGCGCCAGCACTGGGCGGAT GAACCAGATGACTCTTCTGATTCTATTATTAAACACAAACCTCTGTGGGCTAGTTATGACTTTAACCGCGGGAAGGGAAAGAAGAAGACGACGAAGAATA AGAACCAGCATAAGAAACAAGGAGATGTCTATAGAACTTATGGAACGAGAGTTATTCCTGTCTTTGTGCTATCATTTGCTGATGTGGATCCGCAGCTTAT GATGGATGATGAGAGCCTTGTTTGGACAAGCAACGATGTTGTCATTGTTCTCGAGCATCAAAACGATAAGATACCTCTGAGTTATGTTTCGGAAACTGAA AGAAGGACAGCCCTTCCGTCTCTGCCACAGCGTCACATAATGGCAGGCCTTGCATCTGCTGTCGGTGGGCTGAGCGCCCCGTACGAGAAGGCTTCCCATG TGCACGAGAGGCCAGTTGTTAATTGGCTTCTTGCAGCTGGATGCCATCCATTTGGCCCATTTTCAAACACTTCCCAAACTAGTAAACTCCTGCAAGACGT TGCTTTGAGGAACACTATATATGCTCGTGTAGACGCTGCACTTCATAAGATTCGCGATACATCCGAGAGTGTCCAACTTTTCGCATCAGAGTACCTGAAA ACCCCGCTGGGTGAACCTGTGAAAGGCCAGAAGAACAAGACGACTACCGAACTGTGGTTAGAAAAGTTCTACAAGAAAACAACCAACCTGCCTGAACCCT TCCCTCACGAACTGGTTGAACGACTCGAGAAATACCTCGATAATATCGAGGAGCAACTCGTGGACCTCTCGTCCCTACTCTACGACCACAAACTACAGGA TGCACATGTGAACAGCTCGGAAATTCTTCAGAGCTCGATCTTTACGCAGCAGTACGTCGAGCATGTGTTGTCGAGTGAGAAAGACAAGATGAAGTGCTGC GAGATCGAGTACAAGTATCCGGTGCATTCGTCGCAAACCTACGTGTATGGTGGAATTCTCCTGGCAGGATTTGTGGTGTACTTCCTGGTCATTTTCTTCT CTAATCCAGTCCGATGA
AA sequence Show only first row Show all	>Lus10037780 pacid=23167110 polypeptide=Lus10037780 locus=Lus10037780.g ID=Lus10037780.BGIv1.0 annot-version=v1.0 MAGKSVSNSSSHDSILSLSLLLLLLLTRSDSAPQPFRRDPGHAQWHHGAFHDVKETVRSDVRRMLHTRAEVPFQVPLEVNVVLVGFGGDGGYRYSLDVNK LEEFLKLSFPTHRPSCLETGELLDIEHHLIYNVFPAGQAELIALEKALKEAMVPAGSARETDFGREVPLFEVEATTLEPVFQKFHSYIFDTEAMESSGDA EHDRPAPVAIFLANFDKVRMDPRNKEIDLDRLMFSKIETLSEEELKKQEGDYIYRYKYNGGGASQVWLSSDRFVVIDLSAGPCTYGKIETEEGSVSTRTM PRIRNVVLPKGSGIGTISDYSSPEIFLGQISALVSTTVEHVIAPDVRFETVDLTTRLLVPIIVLQNHNRYNIMQSGHNYSIDTSEIETEASEIAWSCSFL YLNWLRKMIHNEQEVVVVGGSHSLHRHEKLAIAVSKAMRGHSLQETRKDGRFHVHTKTYLDGAVLKEEMERSADVLAAGLLEVADPSLSSKFFLRQHWAD EPDDSSDSIIKHKPLWASYDFNRGKGKKKTTKNKNQHKKQGDVYRTYGTRVIPVFVLSFADVDPQLMMDDESLVWTSNDVVIVLEHQNDKIPLSYVSETE RRTALPSLPQRHIMAGLASAVGGLSAPYEKASHVHERPVVNWLLAAGCHPFGPFSNTSQTSKLLQDVALRNTIYARVDAALHKIRDTSESVQLFASEYLK TPLGEPVKGQKNKTTTELWLEKFYKKTTNLPEPFPHELVERLEKYLDNIEEQLVDLSSLLYDHKLQDAHVNSSEILQSSIFTQQYVEHVLSSEKDKMKCC EIEYKYPVHSSQTYVYGGILLAGFVVYFLVIFFSNPVR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16180			unknown protein		Lus10037780 [exp]	0	1
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10022911 [exp]	1.4	0.9593
AT4G16180			unknown protein		Lus10017062 [exp]	4.2	0.9405
AT2G01720			Ribophorin I (.1)		Lus10040410 [exp]	4.9	0.9545
AT1G29370			Kinase-related protein of unkn...		Lus10015262 [exp]	5.8	0.9265
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004937 [exp]	6.0	0.9359
AT3G53110		LOS4	LOW EXPRESSION OF OSMOTICALLY ...		Lus10023886 [exp]	6.6	0.9344
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10008647 [exp]	6.7	0.9486
AT5G07350		TSN1, AtTudor1	Arabidopsis thaliana TUDOR-SN ...		Lus10032520 [exp]	7.7	0.9442
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10034682 [exp]	11.8	0.9404
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10037403 [exp]	11.8	0.9454

Compare expression of checked genes

Lus10037780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.