Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49480 150 / 1e-46 ACP1, ATCP1 Ca2+-binding protein 1, Ca2+-binding protein 1, Ca2+-binding protein 1 (.1) AT3G22930 48 / 5e-07 CML11 calmodulin-like 11 (.1) AT5G37780 44 / 7e-06 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT1G66410 44 / 7e-06 ACAM-4, CAM4 calmodulin 4 (.1.2) AT5G21274 44 / 9e-06 ACAM-6, CAM6 calmodulin 6 (.1) AT3G50360 44 / 1e-05 CEN1, ATCEN2 CENTRIN 1, centrin2 (.1) AT3G10190 44 / 2e-05 Calcium-binding EF-hand family protein (.1) AT3G43810 43 / 2e-05 CAM7 calmodulin 7 (.1) AT5G17470 43 / 2e-05 EF hand calcium-binding protein family (.1) AT4G14640 43 / 2e-05 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017063 [exp] 254 / 2e-87 AT5G49480 164 / 2e-52 Ca2+-binding protein 1, Ca2+-binding protein 1, Ca2+-binding protein 1 (.1) Lus10039391 [exp] 44 / 1e-05 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10041288 [exp] 43 / 2e-05 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 43 / 2e-05 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 43 / 2e-05 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10027283 [exp] 43 / 2e-05 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10018012 [exp] 43 / 3e-05 AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2) Lus10019349 [exp] 44 / 4e-05 AT4G37000 289 / 4e-94 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1) Lus10001775 [exp] 42 / 5e-05 AT2G27030 192 / 1e-63 calmodulin 5 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G146900 [exp] 149 / 3e-46 AT5G49480 157 / 2e-49 Ca2+-binding protein 1, Ca2+-binding protein 1, Ca2+-binding protein 1 (.1) Potri.008G103900 [exp] 140 / 7e-43 AT5G49480 152 / 1e-47 Ca2+-binding protein 1, Ca2+-binding protein 1, Ca2+-binding protein 1 (.1) Potri.005G052800 [exp] 51 / 2e-08 AT4G14640 228 / 7e-78 calmodulin-like 8, calmodulin 8 (.1) Potri.008G159300 [exp] 49 / 2e-07 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.010G080900 [exp] 49 / 2e-07 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.012G041000 [exp] 49 / 2e-07 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.015G032600 [exp] 47 / 5e-07 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.013G040300 [exp] 45 / 4e-06 AT3G22930 210 / 1e-70 calmodulin-like 11 (.1) Potri.005G138000 [exp] 44 / 1e-05 AT3G50360 275 / 4e-96 CENTRIN 1, centrin2 (.1) Potri.006G026700 [exp] 43 / 2e-05 AT3G43810 300 / 2e-106 calmodulin 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10037781 pacid=23167072 polypeptide=Lus10037781 locus=Lus10037781.g ID=Lus10037781.BGIv1.0 annot-version=v1.0 ATGTGTCCGTCCGGCAGGACTCTCACGGCGGCGACGGCGCCCCACGCGACGCCGGAGTTGAAATCGGCGTTCGACGTCATAGACGCGGATCAAGACGGCA AGATCAGCAGGGACGACCTCTGCAGGTTCTACGCTGGAATCAGGACCGCGTCGGATGTCGTCAACGACGAAGACGACGACGAGATGATAGGAACGATGAT TTCCCTGGCGGATTCCGACAAGGACGGTTTCGTCCAGTACGAGGAATTCGAGAGGGTTCTGGGAGGAACGAAGGGGAAATCGGCAGCGGGAATAACCTCG GGCTCTTCCTCGTCGGACGTCGAAGTAATAATGGCGGATGTATTCAAGGCTATGGATAAGGACGGAGACGGGAAATTGAGCCACGGAGATTTGAAGAGTT ACCTGCAGCTGGCCGGCTTCGATGCCAGCGACGATGAGATTGGAGCAATGATCAGATTGGGCGCTGCTGGGGGAGATGAAGACAACGGCGTTTCGTATGA GGGATTGCTTAGGATTCTGGCTGTTGAATGA
AA sequence Show only first row Show all	>Lus10037781 pacid=23167072 polypeptide=Lus10037781 locus=Lus10037781.g ID=Lus10037781.BGIv1.0 annot-version=v1.0 MCPSGRTLTAATAPHATPELKSAFDVIDADQDGKISRDDLCRFYAGIRTASDVVNDEDDDEMIGTMISLADSDKDGFVQYEEFERVLGGTKGKSAAGITS GSSSSDVEVIMADVFKAMDKDGDGKLSHGDLKSYLQLAGFDASDDEIGAMIRLGAAGGDEDNGVSYEGLLRILAVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49480		ACP1, ATCP1	Ca2+-binding protein 1, Ca2+-b...		Lus10037781 [exp]	0	1
AT5G10530			Concanavalin A-like lectin pro...		Lus10007079 [exp]	2.0	0.9652
					Lus10037782 [exp]	6.2	0.9498
AT5G49480		ACP1, ATCP1	Ca2+-binding protein 1, Ca2+-b...		Lus10017063 [exp]	10.3	0.9681
AT1G70170		MMP	matrix metalloproteinase (.1)		Lus10010719 [exp]	14.7	0.9373
AT1G30755			Protein of unknown function (D...		Lus10013554 [exp]	15.6	0.9358
AT5G36970		NHL25	NDR1/HIN1-like 25 (.1)		Lus10020783 [exp]	18.8	0.9584
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10003387 [exp]	19.5	0.9270
AT5G10530			Concanavalin A-like lectin pro...		Lus10020456 [exp]	20.9	0.9573
AT1G70170		MMP	matrix metalloproteinase (.1)		Lus10029207 [exp]	25.5	0.9503
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10006718 [exp]	26.8	0.9535

Compare expression of checked genes

Lus10037781 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.