Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017064 [exp] 246 / 5e-84 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G102300 [exp] 69 / 1e-14 AT3G06600 / unknown protein Potri.008G103600 [exp] 62 / 4e-12 AT3G06600 / unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037782 pacid=23167033 polypeptide=Lus10037782 locus=Lus10037782.g ID=Lus10037782.BGIv1.0 annot-version=v1.0 ATGATTCTTCCTCTCCTTCATCTGAACTCTTTGGTGCTGAGTCCAGCTCTCTCTTCTACATCAGAAATAACCCCGTCCTCTCACGCTCCTCTTACGTCCG AGGTCATCAACGTTCCATATGATGGAACTAATGGACTAGTTAAGCCAGATATTCAACCCGTGGAAGCAGATCTCACTGTCAATCTCCTCAAGAAAGTGCA ATCTGAAGCTCCAGAATCCGGTGATGCTAATAATCGTTACAAGAAGATCCTGGACGAGTTGATTAGGGTCATCATAGACCAGTATTGCGCTCTGCCTGAA GAGACAGGCTGGTTGATGAAGCTTCTTTCATGGAAAAGGGGAGTTGTGTTTCTGTATTTTCTGACATGGAGCTTCGCAGTTTGCATGCTGATGCTGGCAT CTTTTGATTCTGGATGTGGTGGCTATGACTGCAGACTTCGCCCAACTTGA
AA sequence Show only first row Show all	>Lus10037782 pacid=23167033 polypeptide=Lus10037782 locus=Lus10037782.g ID=Lus10037782.BGIv1.0 annot-version=v1.0 MILPLLHLNSLVLSPALSSTSEITPSSHAPLTSEVINVPYDGTNGLVKPDIQPVEADLTVNLLKKVQSEAPESGDANNRYKKILDELIRVIIDQYCALPE ETGWLMKLLSWKRGVVFLYFLTWSFAVCMLMLASFDSGCGGYDCRLRPT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10037782 [exp]	0	1
AT5G60760			P-loop containing nucleoside t...		Lus10016117 [exp]	3.5	0.9587
AT1G01480		AT-ACC2, ACS2	1-amino-cyclopropane-1-carboxy...		Lus10024673 [exp]	5.9	0.9479
AT5G49480		ACP1, ATCP1	Ca2+-binding protein 1, Ca2+-b...		Lus10037781 [exp]	6.2	0.9498
AT3G05550			Hypoxia-responsive family prot...		Lus10020658 [exp]	9.2	0.9545
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10042662 [exp]	10.4	0.9402
AT3G17800			Protein of unknown function (D...		Lus10041984 [exp]	21.0	0.9482
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10039867 [exp]	27.0	0.9482
AT1G11050			Protein kinase superfamily pro...		Lus10028549 [exp]	29.9	0.9257
AT3G05170			Phosphoglycerate mutase family...		Lus10031518 [exp]	31.0	0.9402
AT5G49480		ACP1, ATCP1	Ca2+-binding protein 1, Ca2+-b...		Lus10017063 [exp]	39.0	0.9480

Compare expression of checked genes

Lus10037782 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.