Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06590 154 / 6e-47 bHLH bHLH148, AIF2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G17100 148 / 2e-44 bHLH bHLH147, AIF3 sequence-specific DNA binding transcription factors (.1.2) AT1G09250 119 / 2e-33 bHLH bHLH149, AIF4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G05800 96 / 5e-24 bHLH bHLH150, AIF1 AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 (.1) AT3G59060 41 / 0.0003 bHLH PIF5, PIL6 PHYTOCHROME-INTERACTING FACTOR 5, phytochrome interacting factor 3-like 6 (.1.2.3.4) AT2G47270 38 / 0.001 bHLH bHLH151, UPB1 UPBEAT1, sequence-specific DNA binding transcription factors;transcription regulators (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017065 [exp] 281 / 2e-96 AT3G06590 171 / 1e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10031425 [exp] 52 / 1e-08 AT1G09250 51 / 7e-09 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10033562 [exp] 42 / 0.0002 AT1G18400 121 / 5e-34 BR enhanced expression 1 (.1) Lus10010907 [exp] 41 / 0.0002 AT3G06590 81 / 8e-19 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G103500 [exp] 229 / 3e-76 AT3G17100 174 / 2e-54 sequence-specific DNA binding transcription factors (.1.2) Potri.010G147400 [exp] 211 / 5e-69 AT3G17100 174 / 3e-54 sequence-specific DNA binding transcription factors (.1.2) Potri.005G012400 [exp] 122 / 2e-34 AT1G09250 109 / 1e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G007700 [exp] 112 / 9e-31 AT1G09250 95 / 4e-24 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G201500 [exp] 44 / 1e-05 AT3G58850 82 / 4e-21 phy rapidly regulated 2 (.1) Potri.002G060100 [exp] 41 / 0.0001 AT3G58850 80 / 4e-20 phy rapidly regulated 2 (.1) Potri.002G055400 [exp] 41 / 0.0006 AT2G43010 177 / 6e-50 phytochrome interacting factor 4 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037783 pacid=23167199 polypeptide=Lus10037783 locus=Lus10037783.g ID=Lus10037783.BGIv1.0 annot-version=v1.0 ATGGCGTCACCGATGATGATATCTTCCAATCCAGTAACGAACACCACGAACACCGATCGGTCGAGGAGGAAAAAGAAGAAGAAATCGCAGGCGGCCGCTC AATCGCAGCAGAAACTGAACCAGGACCACGCCAAATGGAAAACCGAGGCTCAACAACAAATCTACTCATCCAAACTCATCCAAGCCTTGTCCCAAGTCCA GCTCAATCCTTCCTCCCCTTCGGCTCCGCGCCGCGGCCGAGCCGTTCGTGAAGCCGCCGATCAAGCCCTCGCCGTCGCCGCCAGAGGAAGATCAAGGTGG AGCAGAGCCATCTTGACTAGCCGTATCAAACTCAAATTCCGTAAGCAACAGCAGCATAAGAGGCAGCAGCTGCATCAGCAGCAACAGCAACACAGACTCA TCTCCGCTTCCGCCGGGAGTACCAGCCGCTCGAGGAAGCCGAGAGTCAGCGTGCTGAGGTTGAGAGGTAAGACTTTGCCCGCCGTTCAAAGGAAAGTCCG GCTTCTCGGCCGGTTAGTCCCCGGTTGCCGGAAGGAACCGATGCCGGTGATTCTTGAAGAAGCTACAGATTACATTGCTGCTTTGGAGATGCAGGTCCGT GCCATGAGTGCCCTGGCGGAGCTTTTGTCCGGCGGTTCCTCCTCCTCTTCTAGCACTGGTCCGCATCCGTCCAGTTGA
AA sequence Show only first row Show all	>Lus10037783 pacid=23167199 polypeptide=Lus10037783 locus=Lus10037783.g ID=Lus10037783.BGIv1.0 annot-version=v1.0 MASPMMISSNPVTNTTNTDRSRRKKKKKSQAAAQSQQKLNQDHAKWKTEAQQQIYSSKLIQALSQVQLNPSSPSAPRRGRAVREAADQALAVAARGRSRW SRAILTSRIKLKFRKQQQHKRQQLHQQQQQHRLISASAGSTSRSRKPRVSVLRLRGKTLPAVQRKVRLLGRLVPGCRKEPMPVILEEATDYIAALEMQVR AMSALAELLSGGSSSSSSTGPHPSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06590	bHLH	bHLH148, AIF2	basic helix-loop-helix (bHLH) ...		Lus10037783 [exp]	0	1
AT1G01225			NC domain-containing protein-r...		Lus10030231 [exp]	1.4	0.8922
AT3G06590	bHLH	bHLH148, AIF2	basic helix-loop-helix (bHLH) ...		Lus10017065 [exp]	2.6	0.8775
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Lus10026567 [exp]	3.0	0.9030
AT4G36750			Quinone reductase family prote...		Lus10026035 [exp]	6.0	0.8832
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Lus10000637 [exp]	6.9	0.8803
AT3G52710			unknown protein		Lus10014206 [exp]	10.7	0.8294
AT5G23340			RNI-like superfamily protein (...		Lus10013444 [exp]	11.4	0.8365
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Lus10040821 [exp]	11.8	0.8559
AT1G30890			Integral membrane HRF1 family ...		Lus10027039 [exp]	11.9	0.8856
AT3G44150			unknown protein		Lus10029366 [exp]	19.0	0.8812

Compare expression of checked genes

Lus10037783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.