Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49510 221 / 4e-74 PFD3, PDF3 prefoldin 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017066 [exp] 279 / 3e-97 AT5G49510 308 / 3e-108 prefoldin 3 (.1.2) Lus10011145 [exp] 244 / 2e-83 AT5G49510 306 / 9e-108 prefoldin 3 (.1.2) Lus10043046 [exp] 244 / 3e-83 AT5G49510 302 / 3e-106 prefoldin 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G147600 [exp] 239 / 3e-81 AT5G49510 293 / 2e-102 prefoldin 3 (.1.2) Potri.008G103400 [exp] 231 / 6e-78 AT5G49510 295 / 6e-103 prefoldin 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0200 [flax] [poplar] Prefoldin PF02996 [flax] [poplar] Prefoldin Prefoldin subunit
Representative CDS sequence Show only first row Show all	>Lus10037784 pacid=23167144 polypeptide=Lus10037784 locus=Lus10037784.g ID=Lus10037784.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCGTCATCGTTGACTGGTACGACGGTGAGAAGAGGGATACCGGGAGCTCAGTTCGTGGAAGATGTCGATACCTATCTCACCCAATCTGGCC TCGACGTCACTTCTGCACTCTCCTTCCTCCAAGAAAGGCTTCAGCAGTATAGGGTTGTGGAGATGAAATTCCTTGCCCAGCAAAGGGATCTTCAGTCTAA GAAGGGTACTGGTGAGGCACTTGTTACCAACTTTGAAGTTGCTGAAGGCATCTACTCACGGGCTCGTATCGATGAGAGTGACTCTGTTTGTTTATGGCTG GGAGCAAATGTCATGTTGGAGTATTCATGTGAAGAGGCCACTACTCTGCTTCAGAAGAATTTAGAGAACGCTAAAGCTAGTCTACAAGTCCTTATTGCGG ATCTGCAGTTCGTCAGGGATCAAGTCACAATAACACAGGTGACACTTCTATGCACACCAACTTGCCATTTACGTTGCTCCAAACTACATTTCAACTTGAG GAACTTGCTAAATCATTCAAATTTAACGAGTAAGTTTTGA
AA sequence Show only first row Show all	>Lus10037784 pacid=23167144 polypeptide=Lus10037784 locus=Lus10037784.g ID=Lus10037784.BGIv1.0 annot-version=v1.0 MASSSSLTGTTVRRGIPGAQFVEDVDTYLTQSGLDVTSALSFLQERLQQYRVVEMKFLAQQRDLQSKKGTGEALVTNFEVAEGIYSRARIDESDSVCLWL GANVMLEYSCEEATTLLQKNLENAKASLQVLIADLQFVRDQVTITQVTLLCTPTCHLRCSKLHFNLRNLLNHSNLTSKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10037784 [exp]	0	1
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Lus10005185 [exp]	2.0	0.8792
AT1G43860			sequence-specific DNA binding ...		Lus10042780 [exp]	20.9	0.8513
AT4G17020			transcription factor-related (...		Lus10012849 [exp]	21.4	0.8556
AT1G59453			B-block binding subunit of TFI...		Lus10000370 [exp]	23.3	0.8323
AT3G44680		HDA09, HDA9	histone deacetylase 9 (.1)		Lus10020570 [exp]	27.1	0.8526
AT5G16800			Acyl-CoA N-acyltransferases (N...		Lus10041016 [exp]	28.1	0.8556
AT5G28060			Ribosomal protein S24e family ...		Lus10015941 [exp]	35.3	0.8224
AT2G36670			Eukaryotic aspartyl protease f...		Lus10035556 [exp]	36.2	0.7972
AT5G55700		BAM4, BMY6	BETA-AMYLASE 6, beta-amylase 4...		Lus10016615 [exp]	39.6	0.8334
AT1G11400		PYM	partner of Y14-MAGO (.1.2.3)		Lus10002977 [exp]	44.3	0.8463

Compare expression of checked genes

Lus10037784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.