Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49520 163 / 2e-46 WRKY ATWRKY48, WRKY48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) AT1G29860 150 / 6e-43 WRKY ATWRKY71, WRKY71 WRKY DNA-binding protein 71 (.1) AT2G47260 151 / 1e-42 WRKY ATWRKY23, WRKY23 WRKY DNA-binding protein 23 (.1) AT4G18170 149 / 4e-42 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1) AT1G69310 145 / 8e-41 WRKY ATWRKY57, WRKY57 WRKY DNA-binding protein 57 (.1.2) AT5G46350 142 / 2e-39 WRKY ATWRKY8, WRKY8 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 8, WRKY DNA-binding protein 8 (.1) AT3G62340 126 / 1e-33 WRKY ATWRKY68, WRKY68 WRKY family transcription factor (.1) AT4G39410 124 / 1e-32 WRKY ATWRKY13, WRKY13 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) AT2G44745 118 / 2e-31 WRKY WRKY12 WRKY family transcription factor (.1) AT5G13080 114 / 1e-30 WRKY ATWRKY75, WRKY75 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017067 [exp] 427 / 1e-149 AT5G49520 184 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10004537 [exp] 150 / 9e-43 AT1G29860 188 / 1e-58 WRKY DNA-binding protein 71 (.1) Lus10004612 [exp] 145 / 9e-41 AT1G29860 188 / 3e-58 WRKY DNA-binding protein 71 (.1) Lus10036891 [exp] 142 / 5e-39 AT1G69310 220 / 5e-70 WRKY DNA-binding protein 57 (.1.2) Lus10037094 [exp] 141 / 2e-38 AT1G69310 209 / 1e-65 WRKY DNA-binding protein 57 (.1.2) Lus10012547 [exp] 117 / 3e-32 AT5G13080 172 / 2e-56 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10036401 [exp] 117 / 5e-31 AT1G64000 170 / 1e-54 WRKY DNA-binding protein 56 (.1) Lus10007906 [exp] 116 / 2e-30 AT1G64000 168 / 6e-54 WRKY DNA-binding protein 56 (.1) Lus10011346 [exp] 113 / 4e-30 AT5G13080 179 / 1e-58 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G147700 [exp] 208 / 4e-64 AT5G49520 182 / 8e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.008G103300 [exp] 196 / 1e-59 AT5G49520 170 / 3e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.002G193000 [exp] 166 / 2e-48 AT2G47260 185 / 3e-56 WRKY DNA-binding protein 23 (.1) Potri.014G118200 [exp] 162 / 5e-47 AT2G47260 190 / 5e-58 WRKY DNA-binding protein 23 (.1) Potri.011G079300 [exp] 150 / 1e-42 AT1G29860 186 / 2e-57 WRKY DNA-binding protein 71 (.1) Potri.010G160100 [exp] 149 / 2e-42 AT1G69310 208 / 4e-66 WRKY DNA-binding protein 57 (.1.2) Potri.001G352400 [exp] 149 / 6e-42 AT1G29860 184 / 1e-56 WRKY DNA-binding protein 71 (.1) Potri.008G094000 [exp] 148 / 7e-42 AT1G69310 213 / 3e-68 WRKY DNA-binding protein 57 (.1.2) Potri.005G203200 [exp] 147 / 4e-41 AT4G18170 187 / 3e-57 WRKY DNA-binding protein 28 (.1) Potri.002G059100 [exp] 145 / 2e-40 AT4G18170 176 / 1e-52 WRKY DNA-binding protein 28 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10037785 pacid=23167089 polypeptide=Lus10037785 locus=Lus10037785.g ID=Lus10037785.BGIv1.0 annot-version=v1.0 ATGGCGAAGAGTAGCGACCAGAAGAACCCGGCGGCGAACAGTTTGCCGTACATGATGACGAGCAGCAGCGGCCAGCTGGAGGAGATGATACAGTCCGGCA GCGGCTTCGCGTCACCAGGAGGATTCTTCTTCGATACTCCGATGATGACTCCGGCTAATAACGGATTCGGCGGATTCATGGAGCTGCTTGATGTCAACGG CGTTAACGGCGGCGGAGACGGTCAAGATTTCTCCGGATATTCTTCATCTCTCTTCGATTTGTTCCAGACTCCGATGTTCCCGCCTTCTACAGCGCCGGAT CTGGCCATGGAATCCCCGGCGGGTGAGCTTTCGTCGGAGGTGGTCAACAATCCGGCGACTCCGAACTCGTCTTCGATATCCTCTTCGTCAAACGAGGCCG GGAACAGTAATAAGAACAACAATAAAGCCGGACTTAAAGCTGAAGAAGGAGTAGTGGAGGAAGAAGAAGAGGATGAAGAAAAGAACAGCTCCAACAAGAA GCAGCTGAAAGCGAAGAAGAAGCCGCAAAAGAAGCAAAGGGAGCCGAGATTTGCGTTCATGACGAAGAGCGAAGTGGATCATTTGGACGACGGTTACAGA TGGAGAAAATACGGTCAAAAAGCTGTCAAAAACAGCCCCTATCCAAGGAGCTACTACCGTTGCACCAGCGCGGGGTGCGGGGTGAAGAAGAGAGTCGAGA GGTCGCACGACGACCCCACGGTTGTTGTGACCACTTACGAAGGACAGCACGTGCATCCTAGCCCGATTACTCCGAGAGGGAGCTTAATTGGAAGCGGAGG GTTCGGAGTGAATAATTACCTTCCGGGTCAGAATCAGTACCAATTGCAGCAGCATGCTTATAATATGTACACATCAATTCCTTCGCTCCACGTTAGTACT AGTGCAGGTACTCCCAGTACTAGTACTCCTCCTGGTACTACTACTAGCAGCCCTTGTTCGGCGAGTTTCCTCAACAATCAATCATCAGCGACTAATTTCC TGAGAGACAACGGGCTGCTCCAAGACATTATTGTGCCGTCGCAGATGACGGTGGTGGAGCCTAAAGAGGAGGAGCAGAGATTTTGA
AA sequence Show only first row Show all	>Lus10037785 pacid=23167089 polypeptide=Lus10037785 locus=Lus10037785.g ID=Lus10037785.BGIv1.0 annot-version=v1.0 MAKSSDQKNPAANSLPYMMTSSSGQLEEMIQSGSGFASPGGFFFDTPMMTPANNGFGGFMELLDVNGVNGGGDGQDFSGYSSSLFDLFQTPMFPPSTAPD LAMESPAGELSSEVVNNPATPNSSSISSSSNEAGNSNKNNNKAGLKAEEGVVEEEEEDEEKNSSNKKQLKAKKKPQKKQREPRFAFMTKSEVDHLDDGYR WRKYGQKAVKNSPYPRSYYRCTSAGCGVKKRVERSHDDPTVVVTTYEGQHVHPSPITPRGSLIGSGGFGVNNYLPGQNQYQLQQHAYNMYTSIPSLHVST SAGTPSTSTPPGTTTSSPCSASFLNNQSSATNFLRDNGLLQDIIVPSQMTVVEPKEEEQRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49520	WRKY	ATWRKY48, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10037785 [exp]	0	1
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10041643 [exp]	9.8	0.8973
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10012850 [exp]	13.5	0.8894
AT5G03230			Protein of unknown function, D...		Lus10015087 [exp]	16.7	0.8715
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10002697 [exp]	17.1	0.8895
					Lus10008052 [exp]	19.6	0.8731
AT2G03530		ATUPS2, UPS2	ARABIDOPSIS THALIANA UREIDE PE...		Lus10037075 [exp]	21.0	0.8800
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Lus10002214 [exp]	27.0	0.8888
AT4G03420			Protein of unknown function (D...		Lus10018572 [exp]	28.5	0.8711
AT3G21865		PEX22	peroxin 22 (.1)		Lus10015100 [exp]	29.1	0.8788
AT5G07610			F-box family protein (.1)		Lus10041733 [exp]	30.8	0.8648

Compare expression of checked genes

Lus10037785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.