Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16270 331 / 8e-112 Peroxidase superfamily protein (.1) AT5G05340 261 / 7e-85 Peroxidase superfamily protein (.1) AT1G68850 259 / 7e-84 Peroxidase superfamily protein (.1) AT5G66390 249 / 3e-80 Peroxidase superfamily protein (.1) AT5G58400 244 / 3e-78 Peroxidase superfamily protein (.1) AT4G36430 244 / 3e-78 Peroxidase superfamily protein (.1) AT2G18150 244 / 4e-78 Peroxidase superfamily protein (.1) AT2G18140 242 / 3e-77 Peroxidase superfamily protein (.1) AT2G35380 241 / 5e-77 Peroxidase superfamily protein (.1.2) AT5G19890 240 / 1e-76 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017069 [exp] 500 / 2e-178 AT4G16270 392 / 3e-136 Peroxidase superfamily protein (.1) Lus10017068 [exp] 262 / 1e-87 AT1G34350 228 / 9e-78 unknown protein Lus10009937 [exp] 262 / 3e-85 AT5G05340 347 / 6e-120 Peroxidase superfamily protein (.1) Lus10010634 [exp] 253 / 2e-81 AT1G44970 449 / 5e-159 Peroxidase superfamily protein (.1) Lus10004163 [exp] 252 / 2e-81 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10027989 [exp] 248 / 3e-79 AT5G06720 400 / 1e-139 peroxidase 2 (.1) Lus10034207 [exp] 247 / 3e-79 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10041784 [exp] 246 / 6e-79 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10006534 [exp] 244 / 2e-78 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G103200 [exp] 391 / 9e-136 AT4G16270 438 / 1e-154 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 252 / 2e-81 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.001G145800 [exp] 252 / 3e-81 AT2G35380 458 / 6e-163 Peroxidase superfamily protein (.1.2) Potri.013G083600 [exp] 250 / 9e-81 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.005G118700 [exp] 248 / 1e-79 AT5G66390 504 / 0.0 Peroxidase superfamily protein (.1) Potri.007G019300 [exp] 246 / 5e-79 AT5G66390 507 / 0.0 Peroxidase superfamily protein (.1) Potri.013G156500 [exp] 245 / 9e-79 AT5G05340 441 / 1e-156 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 245 / 1e-78 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.003G214500 [exp] 242 / 1e-77 AT5G19890 422 / 4e-149 Peroxidase superfamily protein (.1) Potri.003G214700 [exp] 243 / 2e-77 AT5G06720 459 / 5e-163 peroxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10037786 pacid=23167317 polypeptide=Lus10037786 locus=Lus10037786.g ID=Lus10037786.BGIv1.0 annot-version=v1.0 ATGGAGGAGCTGAAATCAGCTATGAACGCACACTTGGACCAGATGGCGGATCTGGTTCAGAAGCTCTCTTCCGAGCTCCGCTCCGGCCTCCAACCTGCTT ACGAGAATTTCATCGGCTTCTTCCACGCCGTTGACTGGACGGAGCATTGGTTAATTGGGATGATGGGGTTCCATGCATTGCTGCTGATAGTAGCTGTGAT CACCAGGAGGAAGACTAACTTCCAGATGGGGTTGTTCCTTCTTACCTTGGCTGGTGTACGCTTTGCCGAGATCCTGAACGGAATGCTCAGAAGTAACTGG AGGAGCTTTGCAACTCAGAATTATTTTGACCCGCAAGGACTCTTTTTGTCTGCAGTCTGGTCTGGACCTCTTCTTGTCATTGCGTGTCTTATCTTGGGAT GTGACGGGTCTGTGTTGCTGGATGATACGGACACATTCCAGGGAGAAAAGACTGCGCCTCCCAACTTGAATTCTCTCAGAGGGTTTGAAGTTATCGATGC AATTAAGTCGGAGATCGAAGCGGTCTGCCCCCAAGTCGTTTCCTGTGCTGACATTCTCGCCATTGCAGCTCGCGACTCTGTTCTTCTTTCTGGAGGACCG AGTTGGGAAGTTCAAATGGGCAGGAAAGATGGATTAACGGCTAGTAAAGCTGCAGCCACTGCGAACCTCCCAGGGCCGAATTCGACGGTGGTGGCTCTAG TGGCTAGCTTTCAGAACGTTGGCCTCTCTCTCAATGACATGGTCGCCCTCTCTGGGGCGCACACAATTGGTAAAGCAAGGTGCTCGTCCTTCAGCTCGAG AATCCAGGGTGGAGGCCCTGACGTAAATCTGGACTTCGTTCAGTCACTTCAGCAGCTATGCTCGCAATCTGACGGCGGAAGTGGCGGTGCAACAACGGCG GTGCTGGCTCATCTGGACAATGGGACGCCGATGACGTTTGACAATCAGTACTACATGAATCTGCTTTCTGGAGAAGGGCTGCTGCCGTCGGATCAGGCGC TGACAACCCAAGACGAGGAAACCAGGATGATTGTGGAGTTGTACGTTCAGGATCCTGAGACTTTCTTTCGAGATTTCAGGAATTCTATGCTTAAGATGGG GAGCTTGGTCGGGATTGCGGGGAACAGCGGCGAGATTAGGAGGGACTGCCGGAGTGTTAATTAG
AA sequence Show only first row Show all	>Lus10037786 pacid=23167317 polypeptide=Lus10037786 locus=Lus10037786.g ID=Lus10037786.BGIv1.0 annot-version=v1.0 MEELKSAMNAHLDQMADLVQKLSSELRSGLQPAYENFIGFFHAVDWTEHWLIGMMGFHALLLIVAVITRRKTNFQMGLFLLTLAGVRFAEILNGMLRSNW RSFATQNYFDPQGLFLSAVWSGPLLVIACLILGCDGSVLLDDTDTFQGEKTAPPNLNSLRGFEVIDAIKSEIEAVCPQVVSCADILAIAARDSVLLSGGP SWEVQMGRKDGLTASKAAATANLPGPNSTVVALVASFQNVGLSLNDMVALSGAHTIGKARCSSFSSRIQGGGPDVNLDFVQSLQQLCSQSDGGSGGATTA VLAHLDNGTPMTFDNQYYMNLLSGEGLLPSDQALTTQDEETRMIVELYVQDPETFFRDFRNSMLKMGSLVGIAGNSGEIRRDCRSVN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16270			Peroxidase superfamily protein...		Lus10037786 [exp]	0	1
AT5G46160			Ribosomal protein L14p/L23e fa...		Lus10038513 [exp]	13.7	0.8442
AT1G63270		ABCI1, ATNAP10	ATP-binding cassette I1, non-i...		Lus10022692 [exp]	17.7	0.8151
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10005461 [exp]	29.4	0.7953
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10035128 [exp]	31.3	0.7787
AT3G47300		SELT	SELT-like protein precursor (....		Lus10001253 [exp]	32.4	0.8078
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10016879 [exp]	38.2	0.7750
AT4G01100		ADNT1	adenine nucleotide transporter...		Lus10033947 [exp]	39.0	0.7094
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10037745 [exp]	40.2	0.7860
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10037744 [exp]	41.4	0.7779
AT5G57440		GPP2, GS1	GLYCEROL-3-PHOSPHATASE 2, Halo...		Lus10006954 [exp]	43.4	0.7705

Compare expression of checked genes

Lus10037786 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.