Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07910 1531 / 0 ATRNL, RNL, AtRLG1 ARABIDOPSIS THALIANA RNA LIGASE, AtRLG1, RNAligase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017071 [exp] 2139 / 0 AT1G07910 1580 / 0.0 ARABIDOPSIS THALIANA RNA LIGASE, AtRLG1, RNAligase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G083100 [exp] 1613 / 0 AT1G07910 1596 / 0.0 ARABIDOPSIS THALIANA RNA LIGASE, AtRLG1, RNAligase (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037788 pacid=23167016 polypeptide=Lus10037788 locus=Lus10037788.g ID=Lus10037788.BGIv1.0 annot-version=v1.0 ATGGTGGTAGTATGCAATATAATGCAGAGAATCCTCTGCTCTCTCACAATCGCTCTCCCTTTCTCTTCTTCCTCTTCCAGAGCTTTCTCTCGCCGCCCAC TTCCTCTCATTCCTCCTTCCTCTTTCGCATCTTCTTCTCCTCTTCATCTCCAAATGCCTCAGAAAAGAGGTGGACAGAAGGGACAGGCGTGGAGGCCAAA GAATCACGCAGATAAGTCCTCGTCCGCAGCTGTTGATGAAGTTATCACTAGTAAATTAGCTGATTTGAGTGTTGCTGAAAACACTGGACACTCTCATGGT CAATCCTCCTCCAAGCCGCAGTTTGGCAATGCACAACCAGGCCCAAAAACTGTTTGGAAGGCTGAGGCTTATAGCACTGTCAGTGGAGCTACAACTGTCG AAGCTGATAGTACGTCTGTGCAAAACACTGTGACTAATGGCCAGGGAATTGTAGCTTCGTCTCTGGATTTGAGCCGACTGTTTAAGGGAAACCTGTTGGA TAATTTTACTGTGGACAACTCAACATATTCCCGCAGCCAAATTAGAGCCACTTTCTATCCTAAATTTGAAAATGAGAAATCTGATCAAGAGATTAGGACG AGGATGATTGAGATGGTATCTAAAGGGTTAGCTAACATGGAGGTTACTCTCAAACACTCTGGCTCGCTTTTCATGTATGCTGGCAATAAGGGGGGAGCAT ATGCGAAAAACAGCTTTGGCAACATATACACAGCCGTTGGTGTCTTCGTTCTTGGACGAACGTTTCAGGAGGCTTGGGGAACTGCTGCTGCAAAGAAACA AGAAGAGTTCAATGATTTTCTTGAGAGAAACAATATGTGCATATCAATGGAGCTCGTAACTGCTGTTCTAGGAGATCATGGGCAGCGGCCCAATGAAGAT TATGTGGTTGTGACTGCTGTTACAGAACTGAGCAATGGAAAACCAAAATTCTACTCAACTCCTGAAGTGATTGCTTTTTGTCGAAAATGGCGCCTCCCTA CAAATCATATTTGGTTGTGCTCAACAAGGAAATCTGCAATGTCATTTTTTGCTGCCTTTGATGCGCTTTGCGAAGAAGGAACAGCTACTACTGTCTGCAG GGCACTTGATGAAGTTGCTGATATATCTGTCCCAGGTTCGCTAGACCATATAAAGGCTCAAGGTGAAATCTTGGAGGGTTTAGTGGCTCGTATTGTACCT CATGAGAGCTCGAAACATATGGAGGGGGTCTTGAAAGAAAATCCTCTTCCACCGATGGATGAAGCTGGCACTTCTTTGGGACCAAGCCTACGGGAAATTT GCGCTGCAAATAGGTCAGATGAAAAACAACAAATGAAAGCACTCCTCCAAAGTGTTGGCCCTTCTTTTTGCCCCGACTCTGTGGACTGGTTTGGAATAGA TTCTAGTGAGGCACATTCAAGAAATACCGACAAATCGGTGGTTACAAAATTTTTGCAAGCTTGCCCTGCTGACTATCAGACCACTAAAGTGCAGGAAGTT GTCCGTCTGCTGAGAGAAAGACGCTTACCTGTTGCTTTTAAATGTTATCATAACTTCCATAGAGTTGACGCCATTACGAAAGATAACCTCTGCTACAGGA TGGTTGTCCATGTGCGTAGTGATTCAGCTTTTCGCCGATATCAAAAGGAGATGAGGCACAAGCCTGAGTTGTGGCCATTATACCGAGGTTTTTTCATTGA CATCAATCTCTTCAAGGCGAACACAAAGAAAGCTACTGAAATGTTGGAAAGCAAAGATAACAAATTGGGAAATGAAAATGGAGTTGGATTAGCAAAAGAC AGCCTTGCTGATGATGATGCAAATTTGATGATCAAACTAAAATTTCTTACATACAAGTTGAGAACATTTTTAATTCGTAATGGGTTGTCAGTTCTTTTCA AGGACGGTCCAGCTGCTTATAGGACTTACTACCTAAGGCAAATGAAAATTTGGGGCACTTCAGCAGAAAAGCAGAGGGGACTTAGCAAGATGCTTGATGA ATGGGCTATCCATATCCATCGGAAATGTGGCAACAAGCAGTTGTCTTCGTCAATATATCTTAGTGAAGCTGAGCCTTTTCTCGAACAGTATGCGAAACGC AGTCCGGCAAACCAGGCTCTGATCGGATCTGCTGGAAGTTTAGTAAGGGCTGAAGATTTTATGGCCATCATAGAAGGTGGTAGGGACGAAGAAGGTGATA TTGATAGAGAAAGAGAGGTGGAACCTCCTAGTCCTAGTTCATCAGTCCAGGAAGCTGTCCATAAGGATGAGGGTTTGATTATCTTCTTTCCAGGAATACC TGGTTGTGCGAAATCTGCACTTTGCAAAGAGATATTGAGTTCTCCTGAAGGGCTTGGGGACGATCGCCCAGTTCACAGTTTGATGGGTGATCTCATTAAA GGGAGGTACTGGCAGAAGGTTGCTGAAGATCGCCGGAAGAAACCCTACTCTATAATGCTTGCTGACAAGAATGCACCAAATGAAGAAGTCTGGAAACAGA TTGAACAAATGTGCAAATCCACCCGAGCTTCTGCCATCCCAGTAGTACCAGATTCTGAAGGAACTATTTCAAATCCGTTTTCACTTGATGCATTAGCTGT TTTCATTTTCCGCGTGCTTCAACGAGTTAATCACCCGGGTAACTTGGATAAAGCATCTCCAAACGCTGGTTATGTGCTCCTAATGTTTTATCACCTCTAT GAGGGGAAGAATCGGAGCGAGTTTGAGGACGAGTTAATCGAACGCTTTGGATCACTTGTAAAGATGCCATTGCTTAAATCAGAAAGGAGTCCTCTGCCAG ATTCAGTTAGATCAGTTTTGGAAGAGGGGATAAGCCTATACGATCTTCACAGAAATAGACATGGAAGATTGGAGTCGACAAAGGGTACATACACAAAAGA GTGGGCCAAATGGGAGAAGCAGCTAAGAGACACTCTTTCTGCGGCTTCTGAGTATCTAACTTCCATTCAGGTTCCATTTGATTCTGCCGTTCAACAAGTA CTGGAGCAGCTAAAGAGTACTGCCAAGAAAGACTACAGAACCCCAACAAGTACAGAAAAGAGGGCATTAGGAACAATTGTTTTTGCCGCTGCCAGTTTAC AAGTCTCGGAAATCTCCAGCTTTCTTGATGATCTAGCGCAGAAGAACCCCGAGGCCAAACTGTTTCTCAAAGACAAGGACCTGGCACAGAACCTTCAAAG GGCTCACGTGACTCTAGCTCACAAAAGAAGTCATGGCGTTACAGCAGTAGCTAAATTCGGACAATTTATCCACCGAAACGTTCCGGTGGAGTTCACTGCA CTTTTCTTCACTACCAAAATGGCTGCACTAGAGGCACAGGTCGGGTCGGTGGATGGCGAGAAAATCGAATCGAAGAACGAATGGCCCCATGTCACTCTAT GGACAGCACAGGGCGTTCCACCTAGGGAGGCAAACACACTACGGAAATTGCATTCCGAGGGGAAGGCAACTCGAGTTGAGATCAATCCGCCAGTCACGCT TTCCGGAACTGTTGAGTTCTTCTGA
AA sequence Show only first row Show all	>Lus10037788 pacid=23167016 polypeptide=Lus10037788 locus=Lus10037788.g ID=Lus10037788.BGIv1.0 annot-version=v1.0 MVVVCNIMQRILCSLTIALPFSSSSSRAFSRRPLPLIPPSSFASSSPLHLQMPQKRGGQKGQAWRPKNHADKSSSAAVDEVITSKLADLSVAENTGHSHG QSSSKPQFGNAQPGPKTVWKAEAYSTVSGATTVEADSTSVQNTVTNGQGIVASSLDLSRLFKGNLLDNFTVDNSTYSRSQIRATFYPKFENEKSDQEIRT RMIEMVSKGLANMEVTLKHSGSLFMYAGNKGGAYAKNSFGNIYTAVGVFVLGRTFQEAWGTAAAKKQEEFNDFLERNNMCISMELVTAVLGDHGQRPNED YVVVTAVTELSNGKPKFYSTPEVIAFCRKWRLPTNHIWLCSTRKSAMSFFAAFDALCEEGTATTVCRALDEVADISVPGSLDHIKAQGEILEGLVARIVP HESSKHMEGVLKENPLPPMDEAGTSLGPSLREICAANRSDEKQQMKALLQSVGPSFCPDSVDWFGIDSSEAHSRNTDKSVVTKFLQACPADYQTTKVQEV VRLLRERRLPVAFKCYHNFHRVDAITKDNLCYRMVVHVRSDSAFRRYQKEMRHKPELWPLYRGFFIDINLFKANTKKATEMLESKDNKLGNENGVGLAKD SLADDDANLMIKLKFLTYKLRTFLIRNGLSVLFKDGPAAYRTYYLRQMKIWGTSAEKQRGLSKMLDEWAIHIHRKCGNKQLSSSIYLSEAEPFLEQYAKR SPANQALIGSAGSLVRAEDFMAIIEGGRDEEGDIDREREVEPPSPSSSVQEAVHKDEGLIIFFPGIPGCAKSALCKEILSSPEGLGDDRPVHSLMGDLIK GRYWQKVAEDRRKKPYSIMLADKNAPNEEVWKQIEQMCKSTRASAIPVVPDSEGTISNPFSLDALAVFIFRVLQRVNHPGNLDKASPNAGYVLLMFYHLY EGKNRSEFEDELIERFGSLVKMPLLKSERSPLPDSVRSVLEEGISLYDLHRNRHGRLESTKGTYTKEWAKWEKQLRDTLSAASEYLTSIQVPFDSAVQQV LEQLKSTAKKDYRTPTSTEKRALGTIVFAAASLQVSEISSFLDDLAQKNPEAKLFLKDKDLAQNLQRAHVTLAHKRSHGVTAVAKFGQFIHRNVPVEFTA LFFTTKMAALEAQVGSVDGEKIESKNEWPHVTLWTAQGVPPREANTLRKLHSEGKATRVEINPPVTLSGTVEFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07910		ATRNL, RNL, AtR...	ARABIDOPSIS THALIANA RNA LIGAS...		Lus10037788 [exp]	0	1
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10027170 [exp]	4.4	0.8790
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Lus10010919 [exp]	5.6	0.9085
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10035115 [exp]	5.7	0.8704
AT3G09040			Pentatricopeptide repeat (PPR)...		Lus10009913 [exp]	8.9	0.8782
AT1G63810			unknown protein		Lus10026014 [exp]	10.0	0.9023
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10022483 [exp]	10.8	0.8728
AT5G09840			Putative endonuclease or glyco...		Lus10033511 [exp]	11.0	0.9021
AT1G34380			5'-3' exonuclease family prote...		Lus10039380 [exp]	11.0	0.8353
AT3G30300			O-fucosyltransferase family pr...		Lus10034356 [exp]	14.4	0.8614
AT2G18900			Transducin/WD40 repeat-like su...		Lus10003637 [exp]	16.7	0.9007

Compare expression of checked genes

Lus10037788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.