Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06580 728 / 0 GAL1, GALK GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) AT4G16130 63 / 4e-10 ATISA1, ARA1 arabinose kinase (.1) AT3G42850 60 / 4e-09 Mevalonate/galactokinase family protein (.1) AT3G10700 43 / 0.0005 GalAK galacturonic acid kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017072 [exp] 894 / 0 AT3G06580 728 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10002740 [exp] 813 / 0 AT3G06580 728 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10023094 [exp] 670 / 0 AT3G06580 635 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10016320 [exp] 537 / 0 AT3G06580 496 / 6e-176 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10016321 [exp] 390 / 7e-135 AT3G06580 338 / 8e-115 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10026983 [exp] 55 / 1e-07 AT4G16130 1013 / 0.0 arabinose kinase (.1) Lus10020178 [exp] 53 / 5e-07 AT4G16130 625 / 0.0 arabinose kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G148100 [exp] 799 / 0 AT3G06580 792 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Potri.008G102800 [exp] 789 / 0 AT3G06580 793 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Potri.018G145700 [exp] 75 / 7e-14 AT4G16130 1435 / 0.0 arabinose kinase (.1) Potri.018G003100 [exp] 59 / 5e-09 AT4G16130 1660 / 0.0 arabinose kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0677 [flax] [poplar] GHMP_C PF08544 [flax] [poplar] GHMP_kinases_C GHMP kinases C terminal CL0329 [flax] [poplar] S5 PF10509 [flax] [poplar] GalKase_gal_bdg Galactokinase galactose-binding signature CL0329 [flax] [poplar] S5 PF00288 [flax] [poplar] GHMP_kinases_N GHMP kinases N terminal domain
Representative CDS sequence Show only first row Show all	>Lus10037789 pacid=23167038 polypeptide=Lus10037789 locus=Lus10037789.g ID=Lus10037789.BGIv1.0 annot-version=v1.0 ATGGCGGCGAAACCCAACGAGCTCCCCCTCCCCATCCCGATCTTCCCATCCCTCGAACCAGTCTATGGCGGTTCTCAGCTCGAAGAAGCTCAGCTCCGGT TCGACAACTTGAAGTCCAAGTTCCTCCAAGTATTCAGCCATCCGCCTGACGTCTACGCTCGCGCTCCAGGGAGAGTGAATTTAATCGGGGAGCACATTGA TTACGAAGGATACTCTGTGCTACCAATGGCAATTCGGCAGGATACGATCGTTGCGATCCGTAAGCGCTCTCCTTCCGAAACGGAGAAGCTTCTTCGGATT GCAAATGTTAACGAGAAGTATACAACGTGCACTTATCCTGCGGATCCTAACCAGGAAATTGACTTGAAAAATCACAGATGGGGTCATTATTTTATCTGCG GGTATATAGGTTTTTATGAATACGCCAAAGAGAAAGGGATCAGTGTTGGTATTCCGGTTGGACTTGATGTTATGATTGATGGAACTGTTCCAACTGGTTC CGGACTTTCGAGCTCTGCTGCATTTGTTTGCTCATCTACCATAGCAATTATGGCTGCTTTTGGTGTCAGCCTCCCAAAGAAAGAAGTTGCTCAACTTACT TGTGATTGTGAAAGGCACATAGGAACTCAATCTGGAGGGATGGATCAGGCGATCTCTGTTATGGCTAAGGCTGGATTTGCTGAACTTATCGATTTCAATC CTGTTCGAGCAACTGATGTTCATCTTCCTGATGGGGGAACTTTTGTGATTGCACATTCTTTGGCTAATTCTGAGAAGGCTGTCACTGCTGCGACTAACTA CAATAACAGAGTTGTTGAATGCCGCTTAGCTGCGATCATGCTCGGAATTAAGCTGGGAATGAAACCAGAGGAGGCTACATCAAAAGTCAAAACTCTTTCC GATGTAGAGGGATTATGTGTATCTTTTGCCAAAAAACATGGTTCATCTGATCCTGTTATTGCTGTTAAGGAATTTTTGAAAGAAGAACCATATACAGCTG AAGATATCGAGAACATAACTGGACAGAAGCTGACATCCTTACTTAGCAGTTCTGCATCCTCATTGGAGGTTCTAAAGGCAGCTAAGCACTTCAAGTTGCA TCAGAGGGCAGTTCATGTTTACTCAGAGGCCAAGCGAGTGCATGCTTTTAAAGATACCGTGTTGGCAAAACTCAATGATGATGACAAGCTGAAGAAACTA GGGGAGCTAATGAATGACAGCCACCACAGCTGTAGTGTTCTATACGAATGCAGCTGCCCAGAGCTGGAAGAGCTCGTCAAAGTCTGCCACGAAAACGGAG CATTGGGGGCTAGGCTTACAGGAGCTGGATGGGGCGGTTGTGCAGTTGTATTGGTGAAGGAAGCCATTGTCCCACAGTTCATCCTAAATTTGAAGGACAA ATTTTATCAGTCGAGAATAGAGAAAGGTGTGATAAACAAGTCGGAACTTGGGCTCTATGTGTTTGCTTCAAAGCCTTCGAGCGGGGCTGCTATTTTCAAG TTCTAG
AA sequence Show only first row Show all	>Lus10037789 pacid=23167038 polypeptide=Lus10037789 locus=Lus10037789.g ID=Lus10037789.BGIv1.0 annot-version=v1.0 MAAKPNELPLPIPIFPSLEPVYGGSQLEEAQLRFDNLKSKFLQVFSHPPDVYARAPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKRSPSETEKLLRI ANVNEKYTTCTYPADPNQEIDLKNHRWGHYFICGYIGFYEYAKEKGISVGIPVGLDVMIDGTVPTGSGLSSSAAFVCSSTIAIMAAFGVSLPKKEVAQLT CDCERHIGTQSGGMDQAISVMAKAGFAELIDFNPVRATDVHLPDGGTFVIAHSLANSEKAVTAATNYNNRVVECRLAAIMLGIKLGMKPEEATSKVKTLS DVEGLCVSFAKKHGSSDPVIAVKEFLKEEPYTAEDIENITGQKLTSLLSSSASSLEVLKAAKHFKLHQRAVHVYSEAKRVHAFKDTVLAKLNDDDKLKKL GELMNDSHHSCSVLYECSCPELEELVKVCHENGALGARLTGAGWGGCAVVLVKEAIVPQFILNLKDKFYQSRIEKGVINKSELGLYVFASKPSSGAAIFK F

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10037789 [exp]	0	1
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Lus10034413 [exp]	1.0	0.8006
AT2G32280			Protein of unknown function (D...		Lus10038567 [exp]	1.4	0.7953
AT1G12820		IPS1, AFB3	auxin signaling F-box 3 (.1)		Lus10006738 [exp]	4.0	0.7619
AT1G73390			Endosomal targeting BRO1-like ...		Lus10042289 [exp]	9.9	0.7948
AT2G48030			DNAse I-like superfamily prote...		Lus10029630 [exp]	12.1	0.7516
AT3G18670			Ankyrin repeat family protein ...		Lus10003282 [exp]	18.4	0.7085
AT3G22550			Protein of unknown function (D...		Lus10035894 [exp]	20.3	0.7396
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10017072 [exp]	21.8	0.6679
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Lus10024861 [exp]	24.0	0.6866
AT3G27210			unknown protein		Lus10035217 [exp]	25.3	0.7518

Compare expression of checked genes

Lus10037789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.