Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17120 79 / 1e-17 unknown protein AT4G01960 69 / 9e-14 unknown protein AT1G02380 61 / 5e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017073 [exp] 339 / 3e-118 AT3G17120 110 / 5e-29 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G148200 [exp] 124 / 2e-34 AT3G17120 108 / 5e-29 unknown protein Potri.008G102700 [exp] 110 / 2e-29 AT3G17120 112 / 1e-30 unknown protein Potri.014G118000 [exp] 59 / 2e-10 AT4G01960 88 / 2e-21 unknown protein Potri.002G192700 [exp] 44 / 4e-05 AT4G01960 52 / 4e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037790 pacid=23167120 polypeptide=Lus10037790 locus=Lus10037790.g ID=Lus10037790.BGIv1.0 annot-version=v1.0 ATGGAGGATAATAGTAATACCGCATCTACCGGGAGAGGCTTCTACGTTGATCTAGAAAGCGGACCTCACAACTCCACGGCTGCGGAAGCTGCAGCTTCTT CCACCAATGGCGTCTCCACATATTCCGGGGTGAGATCGTTGTTCAACAAGGTATGCAGCGTGTTTGGGGCATTTGATGGGGTTTCAGCAGCAGACGATTT GCAGAAATCCTTATGTGGGAATAATTCAGACGGGGAGCAAGCGAAATTGGAAGGTGTTAATAATGAGGCGAGTAGTGGTAGTGATCATTCGGAGAAGCAG CAGCAGCGTAGGAAGAGCAGCAGCCCACATAAGAAGTCCCCTAAGCCACCAAGGCCACCTCGTGGCCCTTCATTGGATGCTGCTGATATCAAGCTCATCA AGGAGATTTCCGAGCTTGCCATGTTGAAGCGTGCCAGGATTGAGCGGATTAAGGCCTTGAAAAAGGCGAAAGCTGCCAAGGCTTCGTCGGCTTCTTCCAC TGGCAATCTCTTTGCCATGGTGTTCACTGTTCTGTTCTTCCTGGTTATCATCTGTCAAGGAATGTCGTCAAGAATTACAGCAATAGAGCTAAACACAGCA CCAGAGCCAGCAAGAACAACGGACAACAACGAGCTAATTTCTGTTCAGTACTTTGGAAACCCTTCTGTAAATGACCCTATTGGTTTACAATCCGGGTCTC ACAATCCGGCTGGTTTTGATCCTCCAGATTCTGCAAGAAGCCTACATTGA
AA sequence Show only first row Show all	>Lus10037790 pacid=23167120 polypeptide=Lus10037790 locus=Lus10037790.g ID=Lus10037790.BGIv1.0 annot-version=v1.0 MEDNSNTASTGRGFYVDLESGPHNSTAAEAAASSTNGVSTYSGVRSLFNKVCSVFGAFDGVSAADDLQKSLCGNNSDGEQAKLEGVNNEASSGSDHSEKQ QQRRKSSSPHKKSPKPPRPPRGPSLDAADIKLIKEISELAMLKRARIERIKALKKAKAAKASSASSTGNLFAMVFTVLFFLVIICQGMSSRITAIELNTA PEPARTTDNNELISVQYFGNPSVNDPIGLQSGSHNPAGFDPPDSARSLH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17120			unknown protein		Lus10037790 [exp]	0	1
AT3G49720			unknown protein		Lus10007228 [exp]	6.6	0.8919
AT5G08580			Calcium-binding EF hand family...		Lus10017370 [exp]	7.3	0.8778
AT2G10940			Bifunctional inhibitor/lipid-t...		Lus10027704 [exp]	14.1	0.9007
AT3G15115			unknown protein		Lus10013678 [exp]	14.7	0.8579
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10037200 [exp]	15.0	0.8605
AT1G11545		XTH8	xyloglucan endotransglucosylas...		Lus10018365 [exp]	21.3	0.8946
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10004699 [exp]	21.5	0.8943
AT3G17120			unknown protein		Lus10017073 [exp]	22.6	0.8585
AT5G65650			Protein of unknown function (D...		Lus10014322 [exp]	24.7	0.8524
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10021275 [exp]	26.5	0.8296

Compare expression of checked genes

Lus10037790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.